Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0177 and Shewana3_0178 are separated by 122 nucleotides Shewana3_0178 and Shewana3_0179 are separated by 69 nucleotides
Shewana3_0177: Shewana3_0177 - Delta-9 acyl-phospholipid desaturase (RefSeq), at 210,775 to 211,902
_0177
Shewana3_0178: Shewana3_0178 - DNA-binding transcriptional repressor FabR (RefSeq), at 212,025 to 212,639
_0178
Shewana3_0179: Shewana3_0179 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 212,709 to 213,806
_0179
Position (kb) 212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 211.072 kb on - strand, within Shewana3_0177 at 211.102 kb on - strand, within Shewana3_0177 at 211.108 kb on - strand, within Shewana3_0177 at 211.147 kb on - strand, within Shewana3_0177 at 211.196 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.255 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.386 kb on + strand, within Shewana3_0177 at 211.429 kb on - strand, within Shewana3_0177 at 211.467 kb on + strand, within Shewana3_0177 at 211.518 kb on + strand, within Shewana3_0177 at 211.679 kb on + strand, within Shewana3_0177 at 211.712 kb on - strand, within Shewana3_0177 at 211.752 kb on + strand, within Shewana3_0177 at 211.815 kb on + strand at 211.820 kb on + strand at 211.851 kb on + strand at 211.859 kb on - strand at 212.040 kb on - strand at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.123 kb on - strand, within Shewana3_0178 at 212.195 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.271 kb on + strand, within Shewana3_0178 at 212.391 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.469 kb on - strand, within Shewana3_0178 at 212.471 kb on + strand, within Shewana3_0178 at 212.491 kb on - strand, within Shewana3_0178 at 212.499 kb on + strand, within Shewana3_0178 at 212.600 kb on - strand at 212.618 kb on + strand at 212.734 kb on - strand at 212.757 kb on - strand at 212.757 kb on - strand at 212.806 kb on - strand at 212.875 kb on + strand, within Shewana3_0179 at 212.892 kb on + strand, within Shewana3_0179 at 212.943 kb on + strand, within Shewana3_0179 at 212.966 kb on + strand, within Shewana3_0179 at 213.100 kb on - strand, within Shewana3_0179 at 213.436 kb on - strand, within Shewana3_0179 at 213.563 kb on - strand, within Shewana3_0179
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 211,072 - Shewana3_0177 0.26 +2.5 211,102 - Shewana3_0177 0.29 +1.4 211,108 - Shewana3_0177 0.30 +0.7 211,147 - Shewana3_0177 0.33 +0.2 211,196 + Shewana3_0177 0.37 +0.5 211,247 + Shewana3_0177 0.42 +0.9 211,247 + Shewana3_0177 0.42 +0.2 211,255 - Shewana3_0177 0.43 -0.0 211,270 - Shewana3_0177 0.44 +1.0 211,270 - Shewana3_0177 0.44 +0.1 211,386 + Shewana3_0177 0.54 +0.4 211,429 - Shewana3_0177 0.58 -2.6 211,467 + Shewana3_0177 0.61 +1.4 211,518 + Shewana3_0177 0.66 -0.4 211,679 + Shewana3_0177 0.80 -0.7 211,712 - Shewana3_0177 0.83 +1.0 211,752 + Shewana3_0177 0.87 -0.3 211,815 + +0.5 211,820 + +0.1 211,851 + +0.9 211,859 - -0.3 212,040 - +0.0 212,090 + Shewana3_0178 0.11 -1.5 212,090 + Shewana3_0178 0.11 +0.9 212,090 + Shewana3_0178 0.11 -1.2 212,090 + Shewana3_0178 0.11 +1.0 212,123 - Shewana3_0178 0.16 -1.0 212,195 + Shewana3_0178 0.28 -0.4 212,230 + Shewana3_0178 0.33 +0.1 212,230 + Shewana3_0178 0.33 +0.2 212,230 + Shewana3_0178 0.33 -0.4 212,230 + Shewana3_0178 0.33 +1.5 212,238 - Shewana3_0178 0.35 -0.1 212,238 - Shewana3_0178 0.35 -0.2 212,238 - Shewana3_0178 0.35 +0.6 212,238 - Shewana3_0178 0.35 +1.1 212,238 - Shewana3_0178 0.35 +0.0 212,271 + Shewana3_0178 0.40 -0.2 212,391 + Shewana3_0178 0.60 +0.1 212,461 + Shewana3_0178 0.71 +0.1 212,461 + Shewana3_0178 0.71 +0.0 212,461 + Shewana3_0178 0.71 -0.0 212,469 - Shewana3_0178 0.72 +1.1 212,471 + Shewana3_0178 0.73 +0.6 212,491 - Shewana3_0178 0.76 -0.1 212,499 + Shewana3_0178 0.77 +1.0 212,600 - +1.0 212,618 + -0.7 212,734 - -0.1 212,757 - +0.7 212,757 - +0.3 212,806 - -0.4 212,875 + Shewana3_0179 0.15 +0.4 212,892 + Shewana3_0179 0.17 +0.5 212,943 + Shewana3_0179 0.21 +0.6 212,966 + Shewana3_0179 0.23 -2.3 213,100 - Shewana3_0179 0.36 -0.6 213,436 - Shewana3_0179 0.66 -0.6 213,563 - Shewana3_0179 0.78 -0.1
Or see this region's nucleotide sequence