Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0119 and Shewana3_0120 are separated by 129 nucleotides Shewana3_0120 and Shewana3_0121 are separated by 4 nucleotides Shewana3_0121 and Shewana3_0122 are separated by 63 nucleotides
Shewana3_0119: Shewana3_0119 - phospholipid/glycerol acyltransferase (RefSeq), at 134,716 to 135,276
_0119
Shewana3_0120: Shewana3_0120 - hypothetical protein (RefSeq), at 135,406 to 135,855
_0120
Shewana3_0121: Shewana3_0121 - hypothetical protein (RefSeq), at 135,860 to 136,660
_0121
Shewana3_0122: Shewana3_0122 - hypothetical protein (RefSeq), at 136,724 to 138,367
_0122
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1 at 135.591 kb on + strand, within Shewana3_0120 at 135.591 kb on + strand, within Shewana3_0120 at 135.599 kb on - strand, within Shewana3_0120 at 135.693 kb on - strand, within Shewana3_0120 at 135.936 kb on - strand at 136.301 kb on - strand, within Shewana3_0121 at 136.457 kb on - strand, within Shewana3_0121 at 136.510 kb on - strand, within Shewana3_0121 at 136.663 kb on - strand at 136.721 kb on + strand at 136.729 kb on - strand at 136.923 kb on - strand, within Shewana3_0122 at 137.026 kb on - strand, within Shewana3_0122 at 137.085 kb on + strand, within Shewana3_0122 at 137.319 kb on - strand, within Shewana3_0122 at 137.421 kb on - strand, within Shewana3_0122 at 137.640 kb on + strand, within Shewana3_0122
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 135,591 + Shewana3_0120 0.41 -0.7 135,591 + Shewana3_0120 0.41 -0.6 135,599 - Shewana3_0120 0.43 +0.2 135,693 - Shewana3_0120 0.64 +0.2 135,936 - +0.2 136,301 - Shewana3_0121 0.55 +0.9 136,457 - Shewana3_0121 0.75 +0.4 136,510 - Shewana3_0121 0.81 +0.5 136,663 - +0.5 136,721 + -0.3 136,729 - -0.1 136,923 - Shewana3_0122 0.12 -0.1 137,026 - Shewana3_0122 0.18 -0.2 137,085 + Shewana3_0122 0.22 -0.1 137,319 - Shewana3_0122 0.36 +0.4 137,421 - Shewana3_0122 0.42 +0.4 137,640 + Shewana3_0122 0.56 +0.2
Or see this region's nucleotide sequence