Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0075

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0074 and Shewana3_0075 are separated by 88 nucleotidesShewana3_0075 and Shewana3_0076 are separated by 3 nucleotides Shewana3_0074: Shewana3_0074 - transport protein, putative (RefSeq), at 86,091 to 87,230 _0074 Shewana3_0075: Shewana3_0075 - ABC transporter related (RefSeq), at 87,319 to 88,053 _0075 Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676 _0076 Position (kb) 87 88 89Strain fitness (log2 ratio) -1 0 1at 86.340 kb on + strand, within Shewana3_0074at 86.348 kb on - strand, within Shewana3_0074at 86.358 kb on - strand, within Shewana3_0074at 86.359 kb on - strand, within Shewana3_0074at 86.438 kb on - strand, within Shewana3_0074at 86.469 kb on + strand, within Shewana3_0074at 86.501 kb on - strand, within Shewana3_0074at 86.501 kb on - strand, within Shewana3_0074at 86.528 kb on - strand, within Shewana3_0074at 86.530 kb on + strand, within Shewana3_0074at 86.540 kb on + strand, within Shewana3_0074at 86.646 kb on + strand, within Shewana3_0074at 86.683 kb on + strand, within Shewana3_0074at 86.733 kb on - strand, within Shewana3_0074at 86.794 kb on - strand, within Shewana3_0074at 86.815 kb on - strand, within Shewana3_0074at 86.830 kb on + strand, within Shewana3_0074at 87.002 kb on + strand, within Shewana3_0074at 87.036 kb on + strand, within Shewana3_0074at 87.095 kb on - strand, within Shewana3_0074at 87.169 kb on - strandat 87.331 kb on + strandat 87.334 kb on - strandat 87.384 kb on - strandat 87.402 kb on + strand, within Shewana3_0075at 87.405 kb on - strand, within Shewana3_0075at 87.433 kb on - strand, within Shewana3_0075at 87.738 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.785 kb on + strand, within Shewana3_0075at 87.791 kb on - strand, within Shewana3_0075at 87.801 kb on - strand, within Shewana3_0075at 87.803 kb on - strand, within Shewana3_0075at 87.839 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 88.006 kb on + strandat 88.014 kb on - strandat 88.247 kb on + strand, within Shewana3_0076at 88.336 kb on + strand, within Shewana3_0076at 88.460 kb on - strand, within Shewana3_0076at 88.482 kb on + strand, within Shewana3_0076at 88.490 kb on + strand, within Shewana3_0076at 88.490 kb on + strand, within Shewana3_0076at 88.553 kb on - strand, within Shewana3_0076at 88.651 kb on + strand, within Shewana3_0076at 88.729 kb on - strand, within Shewana3_0076at 88.838 kb on - strand, within Shewana3_0076at 88.852 kb on + strand, within Shewana3_0076at 88.861 kb on + strand, within Shewana3_0076at 89.023 kb on - strand, within Shewana3_0076at 89.046 kb on - strand, within Shewana3_0076

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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86,340 + Shewana3_0074 0.22 -0.1
86,348 - Shewana3_0074 0.23 -0.3
86,358 - Shewana3_0074 0.23 -0.1
86,359 - Shewana3_0074 0.24 -0.3
86,438 - Shewana3_0074 0.30 -0.6
86,469 + Shewana3_0074 0.33 +0.0
86,501 - Shewana3_0074 0.36 -0.1
86,501 - Shewana3_0074 0.36 -0.9
86,528 - Shewana3_0074 0.38 -1.5
86,530 + Shewana3_0074 0.39 +0.6
86,540 + Shewana3_0074 0.39 -0.9
86,646 + Shewana3_0074 0.49 +0.4
86,683 + Shewana3_0074 0.52 +0.4
86,733 - Shewana3_0074 0.56 +0.6
86,794 - Shewana3_0074 0.62 -0.0
86,815 - Shewana3_0074 0.64 -0.3
86,830 + Shewana3_0074 0.65 -0.5
87,002 + Shewana3_0074 0.80 -0.5
87,036 + Shewana3_0074 0.83 +0.2
87,095 - Shewana3_0074 0.88 +1.5
87,169 - -0.1
87,331 + +0.7
87,334 - -0.7
87,384 - -0.0
87,402 + Shewana3_0075 0.11 +0.8
87,405 - Shewana3_0075 0.12 +0.7
87,433 - Shewana3_0075 0.16 -0.3
87,738 + Shewana3_0075 0.57 +1.1
87,783 + Shewana3_0075 0.63 -0.7
87,783 + Shewana3_0075 0.63 +0.9
87,785 + Shewana3_0075 0.63 +1.1
87,791 - Shewana3_0075 0.64 -0.3
87,801 - Shewana3_0075 0.66 +0.1
87,803 - Shewana3_0075 0.66 -0.0
87,839 + Shewana3_0075 0.71 -0.7
87,896 + Shewana3_0075 0.79 +0.0
87,896 + Shewana3_0075 0.79 -0.8
88,006 + +0.4
88,014 - -0.2
88,247 + Shewana3_0076 0.12 -0.5
88,336 + Shewana3_0076 0.17 +0.3
88,460 - Shewana3_0076 0.25 -1.0
88,482 + Shewana3_0076 0.26 -0.3
88,490 + Shewana3_0076 0.27 -0.3
88,490 + Shewana3_0076 0.27 -0.4
88,553 - Shewana3_0076 0.31 -0.7
88,651 + Shewana3_0076 0.37 -0.2
88,729 - Shewana3_0076 0.41 -0.6
88,838 - Shewana3_0076 0.48 +0.7
88,852 + Shewana3_0076 0.49 +0.1
88,861 + Shewana3_0076 0.50 -1.1
89,023 - Shewana3_0076 0.60 +0.0
89,046 - Shewana3_0076 0.61 +0.1

Or see this region's nucleotide sequence