Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0065 and Shewana3_0066 are separated by 58 nucleotides Shewana3_0066 and Shewana3_0067 are separated by 256 nucleotides
Shewana3_0065: Shewana3_0065 - LacI family transcription regulator (RefSeq), at 75,834 to 76,862
_0065
Shewana3_0066: Shewana3_0066 - sucrose phosphorylase (RefSeq), at 76,921 to 78,405
_0066
Shewana3_0067: Shewana3_0067 - sucrose permease scrT <small>(from data)</small>, at 78,662 to 79,882
_0067
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 75.972 kb on - strand, within Shewana3_0065 at 76.018 kb on - strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.054 kb on + strand, within Shewana3_0065 at 76.121 kb on - strand, within Shewana3_0065 at 76.327 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.461 kb on + strand, within Shewana3_0065 at 76.504 kb on + strand, within Shewana3_0065 at 76.506 kb on - strand, within Shewana3_0065 at 76.510 kb on + strand, within Shewana3_0065 at 76.594 kb on + strand, within Shewana3_0065 at 76.743 kb on - strand, within Shewana3_0065 at 76.839 kb on - strand at 76.863 kb on - strand at 76.929 kb on + strand at 77.030 kb on - strand at 77.086 kb on - strand, within Shewana3_0066 at 77.146 kb on + strand, within Shewana3_0066 at 77.212 kb on - strand, within Shewana3_0066 at 77.263 kb on + strand, within Shewana3_0066 at 77.273 kb on + strand, within Shewana3_0066 at 77.276 kb on - strand, within Shewana3_0066 at 77.283 kb on - strand, within Shewana3_0066 at 77.435 kb on - strand, within Shewana3_0066 at 77.582 kb on - strand, within Shewana3_0066 at 77.638 kb on - strand, within Shewana3_0066 at 77.647 kb on + strand, within Shewana3_0066 at 77.931 kb on + strand, within Shewana3_0066 at 77.939 kb on - strand, within Shewana3_0066 at 78.113 kb on + strand, within Shewana3_0066 at 78.226 kb on - strand, within Shewana3_0066 at 78.416 kb on + strand at 78.557 kb on - strand at 79.040 kb on - strand, within Shewana3_0067 at 79.218 kb on - strand, within Shewana3_0067 at 79.246 kb on + strand, within Shewana3_0067
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 75,972 - Shewana3_0065 0.13 +0.9 76,018 - Shewana3_0065 0.18 +0.7 76,054 + Shewana3_0065 0.21 +1.1 76,054 + Shewana3_0065 0.21 +0.5 76,121 - Shewana3_0065 0.28 +0.3 76,327 + Shewana3_0065 0.48 +1.3 76,461 + Shewana3_0065 0.61 +0.7 76,461 + Shewana3_0065 0.61 +0.2 76,504 + Shewana3_0065 0.65 +0.9 76,506 - Shewana3_0065 0.65 +1.3 76,510 + Shewana3_0065 0.66 +0.9 76,594 + Shewana3_0065 0.74 +1.1 76,743 - Shewana3_0065 0.88 +0.7 76,839 - +0.8 76,863 - +0.3 76,929 + -0.9 77,030 - -2.7 77,086 - Shewana3_0066 0.11 -4.0 77,146 + Shewana3_0066 0.15 -4.6 77,212 - Shewana3_0066 0.20 -4.2 77,263 + Shewana3_0066 0.23 -1.5 77,273 + Shewana3_0066 0.24 -3.7 77,276 - Shewana3_0066 0.24 -3.1 77,283 - Shewana3_0066 0.24 -3.1 77,435 - Shewana3_0066 0.35 -2.9 77,582 - Shewana3_0066 0.45 -4.3 77,638 - Shewana3_0066 0.48 -1.3 77,647 + Shewana3_0066 0.49 -3.9 77,931 + Shewana3_0066 0.68 -4.1 77,939 - Shewana3_0066 0.69 -4.4 78,113 + Shewana3_0066 0.80 -2.9 78,226 - Shewana3_0066 0.88 -4.2 78,416 + -4.2 78,557 - +2.3 79,040 - Shewana3_0067 0.31 -2.2 79,218 - Shewana3_0067 0.46 -4.7 79,246 + Shewana3_0067 0.48 +2.3
Or see this region's nucleotide sequence