Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glyQ and Shewana3_0018 are separated by 118 nucleotides Shewana3_0018 and Shewana3_0019 are separated by 85 nucleotides
Shewana3_0017: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 20,889 to 21,794
glyQ
Shewana3_0018: Shewana3_0018 - DNA-3-methyladenine glycosylase I (RefSeq), at 21,913 to 22,488
_0018
Shewana3_0019: Shewana3_0019 - amidohydrolase (RefSeq), at 22,574 to 25,762
_0019
Position (kb)
21
22
23 Strain fitness (log2 ratio)
-1
0
1 at 21.895 kb on + strand at 21.895 kb on + strand at 21.976 kb on + strand, within Shewana3_0018 at 21.976 kb on + strand, within Shewana3_0018 at 22.020 kb on + strand, within Shewana3_0018 at 22.025 kb on + strand, within Shewana3_0018 at 22.226 kb on - strand, within Shewana3_0018 at 22.271 kb on + strand, within Shewana3_0018 at 22.313 kb on + strand, within Shewana3_0018 at 22.340 kb on + strand, within Shewana3_0018 at 22.353 kb on + strand, within Shewana3_0018 at 22.353 kb on + strand, within Shewana3_0018 at 22.541 kb on + strand at 22.674 kb on - strand at 22.684 kb on - strand at 22.806 kb on + strand at 22.814 kb on - strand at 22.869 kb on + strand at 22.883 kb on - strand at 22.960 kb on + strand, within Shewana3_0019 at 22.991 kb on + strand, within Shewana3_0019 at 23.116 kb on + strand, within Shewana3_0019 at 23.126 kb on - strand, within Shewana3_0019 at 23.393 kb on + strand, within Shewana3_0019 at 23.401 kb on - strand, within Shewana3_0019
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 21,895 + +0.1 21,895 + -0.0 21,976 + Shewana3_0018 0.11 -0.6 21,976 + Shewana3_0018 0.11 -0.0 22,020 + Shewana3_0018 0.19 +0.2 22,025 + Shewana3_0018 0.19 -0.5 22,226 - Shewana3_0018 0.54 -0.7 22,271 + Shewana3_0018 0.62 +0.4 22,313 + Shewana3_0018 0.69 -0.8 22,340 + Shewana3_0018 0.74 +0.0 22,353 + Shewana3_0018 0.76 -0.4 22,353 + Shewana3_0018 0.76 -1.1 22,541 + -0.3 22,674 - -0.7 22,684 - -0.4 22,806 + -0.3 22,814 - -1.1 22,869 + +0.1 22,883 - +0.4 22,960 + Shewana3_0019 0.12 -1.3 22,991 + Shewana3_0019 0.13 +0.0 23,116 + Shewana3_0019 0.17 +1.3 23,126 - Shewana3_0019 0.17 +1.2 23,393 + Shewana3_0019 0.26 +0.1 23,401 - Shewana3_0019 0.26 +0.3
Or see this region's nucleotide sequence