Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4252

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4250 and Shewana3_4251 are separated by 144 nucleotidesShewana3_4251 and Shewana3_4252 are separated by 1 nucleotidesShewana3_4252 and Shewana3_4253 are separated by 2 nucleotides Shewana3_4250: Shewana3_4250 - KAP P-loop domain-containing protein (RefSeq), at 125,137 to 126,921 _4250 Shewana3_4251: Shewana3_4251 - hypothetical protein (RefSeq), at 127,066 to 127,518 _4251 Shewana3_4252: Shewana3_4252 - phage integrase family protein (RefSeq), at 127,520 to 129,604 _4252 Shewana3_4253: Shewana3_4253 - hypothetical protein (RefSeq), at 129,607 to 131,877 _4253 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -1 0 1at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.572 kb on + strand, within Shewana3_4250at 126.580 kb on - strand, within Shewana3_4250at 126.674 kb on - strand, within Shewana3_4250at 126.705 kb on - strand, within Shewana3_4250at 126.840 kb on - strandat 127.067 kb on + strandat 127.153 kb on - strand, within Shewana3_4251at 127.164 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.169 kb on + strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.177 kb on - strand, within Shewana3_4251at 127.181 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.317 kb on + strand, within Shewana3_4251at 127.325 kb on - strand, within Shewana3_4251at 127.355 kb on + strand, within Shewana3_4251at 127.377 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.378 kb on + strand, within Shewana3_4251at 127.381 kb on + strand, within Shewana3_4251at 127.385 kb on - strand, within Shewana3_4251at 127.616 kb on + strandat 127.616 kb on + strandat 127.624 kb on - strandat 127.624 kb on - strandat 127.641 kb on - strandat 127.813 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252at 127.853 kb on - strand, within Shewana3_4252at 127.941 kb on - strand, within Shewana3_4252at 127.945 kb on + strand, within Shewana3_4252at 127.951 kb on - strand, within Shewana3_4252at 128.040 kb on - strand, within Shewana3_4252at 128.260 kb on - strand, within Shewana3_4252at 128.529 kb on - strand, within Shewana3_4252at 128.553 kb on - strand, within Shewana3_4252at 128.862 kb on + strand, within Shewana3_4252at 128.885 kb on + strand, within Shewana3_4252at 128.908 kb on + strand, within Shewana3_4252at 128.938 kb on - strand, within Shewana3_4252at 129.025 kb on + strand, within Shewana3_4252at 129.063 kb on - strand, within Shewana3_4252at 129.199 kb on - strand, within Shewana3_4252at 129.257 kb on - strand, within Shewana3_4252at 129.366 kb on - strand, within Shewana3_4252at 129.368 kb on - strand, within Shewana3_4252at 129.510 kb on - strandat 129.529 kb on + strandat 129.529 kb on + strandat 129.537 kb on - strandat 129.537 kb on - strandat 129.636 kb on + strandat 129.654 kb on + strandat 129.679 kb on + strandat 130.037 kb on + strand, within Shewana3_4253at 130.109 kb on + strand, within Shewana3_4253at 130.139 kb on + strand, within Shewana3_4253at 130.312 kb on + strand, within Shewana3_4253at 130.315 kb on - strand, within Shewana3_4253at 130.412 kb on + strand, within Shewana3_4253at 130.580 kb on + strand, within Shewana3_4253at 130.588 kb on - strand, within Shewana3_4253

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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126,572 + Shewana3_4250 0.80 -0.5
126,572 + Shewana3_4250 0.80 -0.6
126,572 + Shewana3_4250 0.80 -0.4
126,580 - Shewana3_4250 0.81 -0.9
126,674 - Shewana3_4250 0.86 +1.0
126,705 - Shewana3_4250 0.88 -0.1
126,840 - +0.2
127,067 + -1.2
127,153 - Shewana3_4251 0.19 +0.6
127,164 + Shewana3_4251 0.22 +0.1
127,169 + Shewana3_4251 0.23 +0.7
127,169 + Shewana3_4251 0.23 +0.5
127,169 + Shewana3_4251 0.23 +0.7
127,169 + Shewana3_4251 0.23 +0.9
127,169 + Shewana3_4251 0.23 -0.0
127,169 + Shewana3_4251 0.23 -0.0
127,177 - Shewana3_4251 0.25 -1.5
127,177 - Shewana3_4251 0.25 +0.3
127,177 - Shewana3_4251 0.25 +0.9
127,177 - Shewana3_4251 0.25 +0.0
127,181 + Shewana3_4251 0.25 +0.4
127,317 + Shewana3_4251 0.55 +0.9
127,317 + Shewana3_4251 0.55 +0.0
127,325 - Shewana3_4251 0.57 +1.2
127,355 + Shewana3_4251 0.64 +0.1
127,377 + Shewana3_4251 0.69 +0.2
127,378 + Shewana3_4251 0.69 -0.4
127,378 + Shewana3_4251 0.69 -1.1
127,381 + Shewana3_4251 0.70 +1.2
127,385 - Shewana3_4251 0.70 +0.2
127,616 + -1.0
127,616 + +0.6
127,624 - +0.1
127,624 - +0.2
127,641 - -0.2
127,813 - Shewana3_4252 0.14 +0.9
127,853 - Shewana3_4252 0.16 -0.3
127,853 - Shewana3_4252 0.16 +0.1
127,941 - Shewana3_4252 0.20 +0.6
127,945 + Shewana3_4252 0.20 +0.0
127,951 - Shewana3_4252 0.21 +0.1
128,040 - Shewana3_4252 0.25 -1.6
128,260 - Shewana3_4252 0.35 +0.9
128,529 - Shewana3_4252 0.48 -0.8
128,553 - Shewana3_4252 0.50 +0.3
128,862 + Shewana3_4252 0.64 -0.0
128,885 + Shewana3_4252 0.65 -0.0
128,908 + Shewana3_4252 0.67 -0.6
128,938 - Shewana3_4252 0.68 -0.7
129,025 + Shewana3_4252 0.72 -1.2
129,063 - Shewana3_4252 0.74 +0.5
129,199 - Shewana3_4252 0.81 +0.2
129,257 - Shewana3_4252 0.83 -0.4
129,366 - Shewana3_4252 0.89 -0.1
129,368 - Shewana3_4252 0.89 -1.0
129,510 - +0.6
129,529 + +0.4
129,529 + -0.8
129,537 - +0.9
129,537 - +0.2
129,636 + -1.6
129,654 + -0.2
129,679 + +1.3
130,037 + Shewana3_4253 0.19 +1.0
130,109 + Shewana3_4253 0.22 -0.9
130,139 + Shewana3_4253 0.23 +0.2
130,312 + Shewana3_4253 0.31 +0.5
130,315 - Shewana3_4253 0.31 -0.4
130,412 + Shewana3_4253 0.35 +0.9
130,580 + Shewana3_4253 0.43 +0.0
130,588 - Shewana3_4253 0.43 -0.2

Or see this region's nucleotide sequence