Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4203
Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Sucrose 5 mM |
---|---|---|---|---|---|
remove | |||||
65,401 | - | Shewana3_4202 | 0.32 | +0.2 | |
65,424 | - | Shewana3_4202 | 0.34 | +0.1 | |
65,573 | + | Shewana3_4202 | 0.48 | -0.7 | |
65,642 | - | Shewana3_4202 | 0.55 | -0.3 | |
65,643 | + | Shewana3_4202 | 0.55 | +1.0 | |
65,705 | + | Shewana3_4202 | 0.61 | -0.1 | |
65,713 | - | Shewana3_4202 | 0.61 | -0.7 | |
65,825 | - | Shewana3_4202 | 0.72 | -0.5 | |
65,968 | - | Shewana3_4202 | 0.85 | +0.1 | |
66,140 | - | -0.4 | |||
66,234 | + | +0.4 | |||
66,332 | + | +0.1 | |||
66,508 | - | Shewana3_4203 | 0.52 | +0.4 | |
66,517 | - | Shewana3_4203 | 0.54 | -1.2 | |
66,703 | - | +0.7 | |||
66,731 | + | +0.3 | |||
66,731 | + | -0.2 | |||
66,739 | - | -0.6 | |||
66,784 | - | -0.2 | |||
66,815 | - | -0.1 | |||
66,903 | + | +0.6 | |||
67,102 | + | +0.2 | |||
67,150 | - | +0.3 | |||
67,150 | - | +1.2 | |||
67,240 | - | -0.2 | |||
67,293 | + | +0.2 | |||
67,314 | - | +0.0 | |||
67,314 | - | -0.2 | |||
67,335 | - | +0.3 | |||
67,394 | - | -0.3 | |||
67,394 | - | -0.3 | |||
67,601 | - | +0.1 | |||
67,649 | - | -0.2 |
Or see this region's nucleotide sequence