Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0559 and BT0560 are separated by 200 nucleotides BT0560 and BT0561 are separated by 16 nucleotides BT0561 and BT0562 overlap by 22 nucleotides
BT0559: BT0559 - transcriptional regulator (NCBI ptt file), at 694,789 to 695,682
BT0559
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
BT0561: BT0561 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 697,129 to 698,043
BT0561
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.883 kb on - strand, within BT0559 at 694.934 kb on - strand, within BT0559 at 694.987 kb on + strand, within BT0559 at 694.988 kb on - strand, within BT0559 at 695.001 kb on - strand, within BT0559 at 695.031 kb on - strand, within BT0559 at 695.059 kb on - strand, within BT0559 at 695.148 kb on + strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.151 kb on - strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.160 kb on + strand, within BT0559 at 695.168 kb on - strand, within BT0559 at 695.437 kb on - strand, within BT0559 at 695.551 kb on - strand, within BT0559 at 695.628 kb on + strand at 695.776 kb on - strand at 695.791 kb on + strand at 695.799 kb on - strand at 695.807 kb on - strand at 695.915 kb on - strand at 695.921 kb on - strand at 695.949 kb on - strand at 696.082 kb on + strand, within BT0560 at 696.246 kb on - strand, within BT0560 at 696.250 kb on - strand, within BT0560 at 696.280 kb on - strand, within BT0560 at 696.474 kb on + strand, within BT0560 at 696.526 kb on + strand, within BT0560 at 696.687 kb on + strand, within BT0560 at 696.735 kb on + strand, within BT0560 at 697.103 kb on + strand at 697.113 kb on + strand at 697.238 kb on - strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.346 kb on + strand, within BT0561 at 697.347 kb on - strand, within BT0561 at 697.421 kb on + strand, within BT0561 at 697.444 kb on - strand, within BT0561 at 697.625 kb on + strand, within BT0561 at 697.760 kb on + strand, within BT0561 at 697.772 kb on - strand, within BT0561 at 697.789 kb on - strand, within BT0561 at 697.958 kb on - strand at 698.005 kb on - strand at 698.005 kb on - strand at 698.009 kb on - strand at 698.009 kb on - strand at 698.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 694,883 - BT0559 0.11 -1.5 694,934 - BT0559 0.16 -2.8 694,987 + BT0559 0.22 -0.9 694,988 - BT0559 0.22 -2.3 695,001 - BT0559 0.24 -1.1 695,031 - BT0559 0.27 -1.3 695,059 - BT0559 0.30 +0.1 695,148 + BT0559 0.40 +0.4 695,151 - BT0559 0.40 -0.9 695,151 - BT0559 0.40 -0.3 695,151 - BT0559 0.40 -0.6 695,160 + BT0559 0.41 -0.6 695,160 + BT0559 0.41 +1.7 695,168 - BT0559 0.42 +2.7 695,437 - BT0559 0.72 +0.4 695,551 - BT0559 0.85 +0.7 695,628 + -0.9 695,776 - -1.4 695,791 + +0.7 695,799 - +1.7 695,807 - -0.9 695,915 - -0.0 695,921 - +0.1 695,949 - +1.7 696,082 + BT0560 0.16 -2.3 696,246 - BT0560 0.30 -0.5 696,250 - BT0560 0.30 -1.8 696,280 - BT0560 0.32 +1.7 696,474 + BT0560 0.48 -1.1 696,526 + BT0560 0.52 -0.3 696,687 + BT0560 0.65 -0.6 696,735 + BT0560 0.69 +1.7 697,103 + +1.4 697,113 + -1.3 697,238 - BT0561 0.12 -1.4 697,346 + BT0561 0.24 -0.8 697,346 + BT0561 0.24 -0.9 697,347 - BT0561 0.24 +0.3 697,421 + BT0561 0.32 -0.5 697,444 - BT0561 0.34 -3.0 697,625 + BT0561 0.54 -0.6 697,760 + BT0561 0.69 -0.6 697,772 - BT0561 0.70 -0.3 697,789 - BT0561 0.72 -0.2 697,958 - -1.3 698,005 - -0.4 698,005 - -1.1 698,009 - -0.3 698,009 - -0.9 698,080 + +0.1
Or see this region's nucleotide sequence