Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29645

Experiment: R2A with Lomefloxacin 0.001 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Lomefloxacin 0.001 mM
2,018,366	+		RR42_RS29640	0.50	-1.2
2,018,367	-		RR42_RS29640	0.50	+2.2
2,018,367	-		RR42_RS29640	0.50	-0.9
2,018,367	-		RR42_RS29640	0.50	+0.6
2,018,367	-		RR42_RS29640	0.50	-1.0
2,018,391	+		RR42_RS29640	0.52	+1.4
2,018,392	-		RR42_RS29640	0.52	-0.5
2,018,393	+		RR42_RS29640	0.52	-1.3
2,018,393	+		RR42_RS29640	0.52	-1.4
2,018,393	+		RR42_RS29640	0.52	-1.1
2,018,393	+		RR42_RS29640	0.52	-0.1
2,018,394	-		RR42_RS29640	0.52	-1.1
2,018,394	-		RR42_RS29640	0.52	+1.3
2,018,394	-		RR42_RS29640	0.52	-1.0
2,018,394	-		RR42_RS29640	0.52	+1.6
2,018,394	-		RR42_RS29640	0.52	-0.9
2,018,421	+		RR42_RS29640	0.54	-2.4
2,018,532	+		RR42_RS29640	0.61	+0.0
2,018,533	-		RR42_RS29640	0.61	-0.1
2,018,533	-		RR42_RS29640	0.61	+0.2
2,018,608	-		RR42_RS29640	0.66	+1.9
2,018,608	-		RR42_RS29640	0.66	+0.2
2,018,757	+		RR42_RS29640	0.76	-1.5
2,018,758	-		RR42_RS29640	0.76	+0.9
2,018,758	-		RR42_RS29640	0.76	+0.8
2,018,758	-		RR42_RS29640	0.76	+0.3
2,018,758	-		RR42_RS29640	0.76	+0.7
2,018,776	+		RR42_RS29640	0.77	+0.7
2,018,776	+		RR42_RS29640	0.77	+0.3
2,018,776	+		RR42_RS29640	0.77	+0.8
2,018,776	+		RR42_RS29640	0.77	+0.0
2,018,776	+		RR42_RS29640	0.77	+0.6
2,018,777	-		RR42_RS29640	0.77	-2.4
2,018,777	-		RR42_RS29640	0.77	+1.1
2,018,777	-		RR42_RS29640	0.77	+0.0
2,018,778	+		RR42_RS29640	0.77	+0.3
2,018,778	+		RR42_RS29640	0.77	-0.6
2,018,784	+		RR42_RS29640	0.78	+1.1
2,018,784	+		RR42_RS29640	0.78	+0.2
2,018,785	-		RR42_RS29640	0.78	-1.6
2,018,814	+		RR42_RS29640	0.80	+1.2
2,018,814	+		RR42_RS29640	0.80	+0.3
2,018,815	-		RR42_RS29640	0.80	+0.3
2,018,877	+		RR42_RS29640	0.84	+0.8
2,018,878	-		RR42_RS29640	0.84	-0.5
2,018,878	-		RR42_RS29640	0.84	+0.1
2,018,892	+		RR42_RS29640	0.85	-1.5
2,018,950	+		RR42_RS29640	0.89	-2.1
2,018,950	+		RR42_RS29640	0.89	-0.1
2,018,950	+		RR42_RS29640	0.89	+0.1
2,018,990	+				+2.9
2,019,000	+				-0.1
2,019,000	+				-0.1
2,019,001	-				+1.8
2,019,001	-				+1.7
2,019,001	-				-0.6
2,019,001	-				+2.1
2,019,001	-				+0.9
2,019,001	-				-0.8
2,019,001	-				-1.1
2,019,023	+				+1.3
2,019,023	+				-0.1
2,019,023	+				-1.5
2,019,024	-				-0.9
2,019,024	-				-1.7
2,019,024	-				-1.3
2,019,024	-				+0.0
2,019,024	-				+0.2
2,019,074	-				-1.9
2,019,152	+				+1.0
2,019,152	+				+1.4
2,019,153	-				+0.7
2,019,287	+				-1.7
2,019,287	+				-1.0
2,019,287	+				-0.1
2,019,288	-				-0.7
2,019,409	+		RR42_RS29645	0.23	-0.3
2,019,410	-		RR42_RS29645	0.24	-1.0
2,019,459	+		RR42_RS29645	0.32	-0.5
2,019,459	+		RR42_RS29645	0.32	+1.1
2,019,494	+		RR42_RS29645	0.38	-0.9
2,019,494	+		RR42_RS29645	0.38	+0.6
2,019,494	+		RR42_RS29645	0.38	+0.2
2,019,495	-		RR42_RS29645	0.38	-0.5
2,019,495	-		RR42_RS29645	0.38	+0.7
2,019,495	-		RR42_RS29645	0.38	+1.0
2,019,520	+		RR42_RS29645	0.42	+2.2
2,019,520	+		RR42_RS29645	0.42	-1.8
2,019,520	+		RR42_RS29645	0.42	+0.8
2,019,520	+		RR42_RS29645	0.42	-1.0
2,019,521	-		RR42_RS29645	0.42	+0.3
2,019,521	-		RR42_RS29645	0.42	-0.2
2,019,521	-		RR42_RS29645	0.42	+2.7
2,019,609	+		RR42_RS29645	0.57	+0.9
2,019,609	+		RR42_RS29645	0.57	-0.0
2,019,702	+		RR42_RS29645	0.72	+0.1
2,019,735	+		RR42_RS29645	0.78	+0.6
2,019,736	-		RR42_RS29645	0.78	-1.1
2,019,736	-		RR42_RS29645	0.78	+2.1
2,019,736	-		RR42_RS29645	0.78	+0.8
2,019,777	+		RR42_RS29645	0.85	-1.7
2,019,777	+		RR42_RS29645	0.85	-0.7
2,019,777	+		RR42_RS29645	0.85	+0.1
2,019,778	-		RR42_RS29645	0.85	-0.2
2,019,778	-		RR42_RS29645	0.85	-1.7
2,019,796	-		RR42_RS29645	0.88	+1.1
2,019,796	-		RR42_RS29645	0.88	-0.7
2,019,817	+				-1.5
2,019,817	+				-1.9
2,019,818	-				+0.7
2,019,818	-				+0.2
2,019,838	+				-0.8
2,019,838	+				-1.1
2,019,856	+				-2.0
2,019,857	-				-1.3
2,019,857	-				+1.7
2,019,857	-				+0.9
2,019,857	-				-0.5
2,019,862	-				+0.6
2,019,862	-				-0.7
2,019,938	+				-2.5
2,019,939	-				+1.9
2,019,939	-				-2.6
2,019,939	-				-0.8
2,019,973	+				+1.4
2,019,974	-				+0.2
2,019,974	-				+0.3
2,019,977	+				+2.2
2,019,977	+				-0.6
2,019,977	+				+0.8
2,019,978	-				-0.3
2,019,978	-				-0.7
2,019,978	-				-1.6
2,019,978	-				+0.1
2,019,978	-				-0.9
2,019,978	-				-0.8
2,019,985	-				-0.4
2,020,000	+				+0.4
2,020,014	+				+1.4
2,020,015	-				-3.2
2,020,015	-				+0.2
2,020,103	+				-0.7
2,020,104	-				-0.9
2,020,104	-				+0.8
2,020,154	-				-2.5
2,020,154	-				+0.9
2,020,172	+				+1.4
2,020,172	+				-0.9
2,020,188	+				-0.2
2,020,194	+				-0.3
2,020,195	-				-0.8
2,020,293	+		RR42_RS29650	0.22	-1.1
2,020,294	-		RR42_RS29650	0.22	-1.4
2,020,294	-		RR42_RS29650	0.22	-1.0
2,020,294	-		RR42_RS29650	0.22	-0.1
2,020,294	-		RR42_RS29650	0.22	-1.3
2,020,294	-		RR42_RS29650	0.22	-2.0
2,020,300	+		RR42_RS29650	0.23	-0.5
2,020,301	-		RR42_RS29650	0.23	-1.2
2,020,301	-		RR42_RS29650	0.23	-1.4
2,020,311	+		RR42_RS29650	0.24	-0.1
2,020,337	+		RR42_RS29650	0.28	-0.6
2,020,337	+		RR42_RS29650	0.28	-0.3
2,020,337	+		RR42_RS29650	0.28	+0.2
2,020,439	+		RR42_RS29650	0.43	-1.1
2,020,465	+		RR42_RS29650	0.47	+1.7
2,020,466	-		RR42_RS29650	0.47	-0.7
2,020,466	-		RR42_RS29650	0.47	-0.2
2,020,470	+		RR42_RS29650	0.47	-1.0
2,020,470	+		RR42_RS29650	0.47	+0.1
2,020,470	+		RR42_RS29650	0.47	+1.1
2,020,534	+		RR42_RS29650	0.57	+0.9
2,020,535	-		RR42_RS29650	0.57	-0.1
2,020,556	+		RR42_RS29650	0.60	-0.2
2,020,557	-		RR42_RS29650	0.60	+0.3
2,020,748	-		RR42_RS29650	0.88	+0.3
2,020,748	-		RR42_RS29650	0.88	+0.1
2,020,756	-		RR42_RS29650	0.89	-1.6
2,020,801	+				+0.2
2,020,801	+				+2.9
2,020,802	-				+1.0
2,020,802	-				-0.5
2,020,831	+				+0.9
2,020,832	-				-0.4
2,020,845	+				-0.4