Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29190 and RR42_RS29195 are separated by 50 nucleotides RR42_RS29195 and RR42_RS29200 are separated by 109 nucleotides RR42_RS29200 and RR42_RS29205 overlap by 4 nucleotides
RR42_RS29190: RR42_RS29190 - isomerase, at 1,906,250 to 1,906,672
_RS29190
RR42_RS29195: RR42_RS29195 - short-chain dehydrogenase, at 1,906,723 to 1,907,508
_RS29195
RR42_RS29200: RR42_RS29200 - lipoprotein, at 1,907,618 to 1,908,157
_RS29200
RR42_RS29205: RR42_RS29205 - hypothetical protein, at 1,908,154 to 1,909,389
_RS29205
Position (kb) 1907
1908
1909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1906.641 kb on + strand at 1906.774 kb on + strand at 1906.953 kb on - strand, within RR42_RS29195 at 1906.985 kb on + strand, within RR42_RS29195 at 1907.057 kb on + strand, within RR42_RS29195 at 1907.057 kb on + strand, within RR42_RS29195 at 1907.058 kb on - strand, within RR42_RS29195 at 1907.058 kb on - strand, within RR42_RS29195 at 1907.135 kb on + strand, within RR42_RS29195 at 1907.138 kb on + strand, within RR42_RS29195 at 1907.138 kb on + strand, within RR42_RS29195 at 1907.139 kb on - strand, within RR42_RS29195 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.707 kb on - strand, within RR42_RS29200 at 1907.733 kb on + strand, within RR42_RS29200 at 1907.733 kb on + strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.734 kb on - strand, within RR42_RS29200 at 1907.766 kb on + strand, within RR42_RS29200 at 1907.767 kb on - strand, within RR42_RS29200 at 1907.899 kb on - strand, within RR42_RS29200 at 1907.899 kb on - strand, within RR42_RS29200 at 1907.918 kb on + strand, within RR42_RS29200 at 1907.954 kb on + strand, within RR42_RS29200 at 1908.101 kb on + strand, within RR42_RS29200 at 1908.112 kb on - strand at 1908.113 kb on + strand at 1908.113 kb on + strand at 1908.114 kb on - strand at 1908.114 kb on - strand at 1908.293 kb on + strand, within RR42_RS29205 at 1908.372 kb on - strand, within RR42_RS29205 at 1908.372 kb on - strand, within RR42_RS29205 at 1908.626 kb on + strand, within RR42_RS29205 at 1908.626 kb on + strand, within RR42_RS29205 at 1908.627 kb on - strand at 1908.627 kb on - strand, within RR42_RS29205 at 1908.697 kb on - strand, within RR42_RS29205 at 1908.731 kb on + strand, within RR42_RS29205 at 1908.732 kb on - strand, within RR42_RS29205 at 1909.037 kb on + strand, within RR42_RS29205
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 1,906,641 + +2.1 1,906,774 + -0.6 1,906,953 - RR42_RS29195 0.29 -1.3 1,906,985 + RR42_RS29195 0.33 +0.4 1,907,057 + RR42_RS29195 0.42 -0.0 1,907,057 + RR42_RS29195 0.42 -0.6 1,907,058 - RR42_RS29195 0.43 +0.4 1,907,058 - RR42_RS29195 0.43 +0.2 1,907,135 + RR42_RS29195 0.52 +0.5 1,907,138 + RR42_RS29195 0.53 +0.4 1,907,138 + RR42_RS29195 0.53 -0.5 1,907,139 - RR42_RS29195 0.53 +1.6 1,907,707 - RR42_RS29200 0.16 -1.1 1,907,707 - RR42_RS29200 0.16 -0.5 1,907,707 - RR42_RS29200 0.16 -1.4 1,907,733 + RR42_RS29200 0.21 +2.0 1,907,733 + RR42_RS29200 0.21 +2.2 1,907,734 - RR42_RS29200 0.21 +1.1 1,907,734 - RR42_RS29200 0.21 -0.3 1,907,734 - RR42_RS29200 0.21 -1.5 1,907,734 - RR42_RS29200 0.21 -1.0 1,907,766 + RR42_RS29200 0.27 +0.6 1,907,767 - RR42_RS29200 0.28 -0.0 1,907,899 - RR42_RS29200 0.52 -0.2 1,907,899 - RR42_RS29200 0.52 -0.2 1,907,918 + RR42_RS29200 0.56 +0.2 1,907,954 + RR42_RS29200 0.62 -2.2 1,908,101 + RR42_RS29200 0.89 +0.5 1,908,112 - -1.8 1,908,113 + +0.5 1,908,113 + +1.4 1,908,114 - +0.0 1,908,114 - +0.1 1,908,293 + RR42_RS29205 0.11 -1.1 1,908,372 - RR42_RS29205 0.18 +0.5 1,908,372 - RR42_RS29205 0.18 -1.0 1,908,626 + RR42_RS29205 0.38 +1.2 1,908,626 + RR42_RS29205 0.38 -0.0 1,908,627 - +0.4 1,908,627 - RR42_RS29205 0.38 +1.3 1,908,697 - RR42_RS29205 0.44 -1.8 1,908,731 + RR42_RS29205 0.47 -1.1 1,908,732 - RR42_RS29205 0.47 -1.3 1,909,037 + RR42_RS29205 0.71 +1.3
Or see this region's nucleotide sequence