Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28340 and RR42_RS28345 are separated by 25 nucleotides RR42_RS28345 and RR42_RS28350 are separated by 38 nucleotides
RR42_RS28340: RR42_RS28340 - phthalate 4,5-dioxygenase, at 1,718,835 to 1,720,118
_RS28340
RR42_RS28345: RR42_RS28345 - ABC transporter substrate-binding protein, at 1,720,144 to 1,721,127
_RS28345
RR42_RS28350: RR42_RS28350 - phthalate 4,5-dioxygenase, at 1,721,166 to 1,722,404
_RS28350
Position (kb) 1720
1721
1722 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1719.467 kb on - strand, within RR42_RS28340 at 1719.467 kb on - strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.710 kb on + strand, within RR42_RS28340 at 1719.711 kb on + strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.711 kb on - strand, within RR42_RS28340 at 1719.712 kb on + strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.713 kb on - strand, within RR42_RS28340 at 1719.720 kb on + strand, within RR42_RS28340 at 1719.839 kb on - strand, within RR42_RS28340 at 1719.854 kb on - strand, within RR42_RS28340 at 1719.857 kb on + strand, within RR42_RS28340 at 1719.937 kb on + strand, within RR42_RS28340 at 1719.937 kb on + strand, within RR42_RS28340 at 1719.938 kb on - strand, within RR42_RS28340 at 1719.958 kb on + strand, within RR42_RS28340 at 1719.959 kb on - strand, within RR42_RS28340 at 1720.112 kb on + strand at 1720.136 kb on + strand at 1720.145 kb on + strand at 1720.568 kb on + strand, within RR42_RS28345 at 1720.568 kb on + strand, within RR42_RS28345 at 1720.569 kb on - strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.857 kb on - strand at 1720.857 kb on - strand, within RR42_RS28345 at 1720.857 kb on - strand, within RR42_RS28345 at 1721.058 kb on - strand at 1721.117 kb on + strand at 1721.139 kb on + strand at 1721.546 kb on + strand, within RR42_RS28350 at 1721.665 kb on + strand, within RR42_RS28350 at 1721.698 kb on + strand, within RR42_RS28350 at 1721.746 kb on + strand, within RR42_RS28350 at 1721.747 kb on - strand, within RR42_RS28350
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 1,719,467 - RR42_RS28340 0.49 -0.0 1,719,467 - RR42_RS28340 0.49 -0.4 1,719,710 + RR42_RS28340 0.68 -0.4 1,719,710 + RR42_RS28340 0.68 +0.5 1,719,710 + RR42_RS28340 0.68 +0.7 1,719,711 + RR42_RS28340 0.68 +0.1 1,719,711 - RR42_RS28340 0.68 +1.1 1,719,711 - RR42_RS28340 0.68 -0.9 1,719,711 - RR42_RS28340 0.68 -1.8 1,719,711 - RR42_RS28340 0.68 -2.6 1,719,712 + RR42_RS28340 0.68 -0.5 1,719,713 - RR42_RS28340 0.68 +0.3 1,719,713 - RR42_RS28340 0.68 -1.0 1,719,713 - RR42_RS28340 0.68 +1.0 1,719,713 - RR42_RS28340 0.68 -1.3 1,719,720 + RR42_RS28340 0.69 -1.1 1,719,839 - RR42_RS28340 0.78 -0.7 1,719,854 - RR42_RS28340 0.79 +0.2 1,719,857 + RR42_RS28340 0.80 +0.5 1,719,937 + RR42_RS28340 0.86 +0.5 1,719,937 + RR42_RS28340 0.86 -1.2 1,719,938 - RR42_RS28340 0.86 +1.6 1,719,958 + RR42_RS28340 0.87 -0.9 1,719,959 - RR42_RS28340 0.88 -1.3 1,720,112 + -1.9 1,720,136 + -1.0 1,720,145 + +1.1 1,720,568 + RR42_RS28345 0.43 +0.5 1,720,568 + RR42_RS28345 0.43 -0.5 1,720,569 - RR42_RS28345 0.43 -1.1 1,720,719 + RR42_RS28345 0.58 +2.8 1,720,719 + RR42_RS28345 0.58 -1.6 1,720,857 - +1.8 1,720,857 - RR42_RS28345 0.72 -0.4 1,720,857 - RR42_RS28345 0.72 -0.7 1,721,058 - -0.6 1,721,117 + +1.3 1,721,139 + -0.4 1,721,546 + RR42_RS28350 0.31 +1.0 1,721,665 + RR42_RS28350 0.40 -1.3 1,721,698 + RR42_RS28350 0.43 +0.2 1,721,746 + RR42_RS28350 0.47 -0.4 1,721,747 - RR42_RS28350 0.47 +0.5
Or see this region's nucleotide sequence