Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26205 and RR42_RS26210 are separated by 71 nucleotides RR42_RS26210 and RR42_RS26215 are separated by 192 nucleotides RR42_RS26215 and RR42_RS26220 are separated by 182 nucleotides
RR42_RS26205: RR42_RS26205 - LysR family transcriptional regulator, at 1,237,265 to 1,238,263
_RS26205
RR42_RS26210: RR42_RS26210 - hypothetical protein, at 1,238,335 to 1,238,655
_RS26210
RR42_RS26215: RR42_RS26215 - diguanylate cyclase, at 1,238,848 to 1,239,825
_RS26215
RR42_RS26220: RR42_RS26220 - citrate lyase subunit beta, at 1,240,008 to 1,240,925
_RS26220
Position (kb) 1238
1239
1240 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1237.879 kb on + strand, within RR42_RS26205 at 1237.879 kb on + strand, within RR42_RS26205 at 1237.880 kb on - strand, within RR42_RS26205 at 1238.082 kb on + strand, within RR42_RS26205 at 1238.193 kb on + strand at 1238.194 kb on - strand at 1238.326 kb on + strand at 1238.332 kb on + strand at 1238.332 kb on + strand at 1238.333 kb on - strand at 1238.404 kb on + strand, within RR42_RS26210 at 1238.411 kb on - strand, within RR42_RS26210 at 1238.417 kb on + strand, within RR42_RS26210 at 1238.446 kb on + strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.467 kb on + strand, within RR42_RS26210 at 1238.467 kb on + strand, within RR42_RS26210 at 1238.468 kb on - strand, within RR42_RS26210 at 1238.468 kb on - strand, within RR42_RS26210 at 1238.479 kb on + strand, within RR42_RS26210 at 1238.499 kb on + strand, within RR42_RS26210 at 1238.548 kb on + strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.551 kb on + strand, within RR42_RS26210 at 1238.552 kb on - strand, within RR42_RS26210 at 1238.552 kb on - strand, within RR42_RS26210 at 1238.563 kb on + strand, within RR42_RS26210 at 1238.564 kb on - strand, within RR42_RS26210 at 1238.575 kb on + strand, within RR42_RS26210 at 1238.575 kb on + strand, within RR42_RS26210 at 1238.812 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.782 kb on - strand at 1239.783 kb on + strand at 1239.783 kb on + strand at 1239.824 kb on - strand at 1239.824 kb on - strand at 1239.952 kb on + strand at 1239.952 kb on + strand at 1240.096 kb on + strand at 1240.301 kb on + strand, within RR42_RS26220 at 1240.312 kb on + strand, within RR42_RS26220
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 1,237,879 + RR42_RS26205 0.61 -0.0 1,237,879 + RR42_RS26205 0.61 -0.8 1,237,880 - RR42_RS26205 0.62 -0.3 1,238,082 + RR42_RS26205 0.82 +1.0 1,238,193 + -1.1 1,238,194 - +0.1 1,238,326 + +0.2 1,238,332 + -0.3 1,238,332 + -0.8 1,238,333 - -0.6 1,238,404 + RR42_RS26210 0.21 +0.3 1,238,411 - RR42_RS26210 0.24 +0.5 1,238,417 + RR42_RS26210 0.26 +0.9 1,238,446 + RR42_RS26210 0.35 +0.4 1,238,447 - RR42_RS26210 0.35 +1.4 1,238,447 - RR42_RS26210 0.35 +1.7 1,238,447 - RR42_RS26210 0.35 +0.2 1,238,467 + RR42_RS26210 0.41 -0.9 1,238,467 + RR42_RS26210 0.41 +1.3 1,238,468 - RR42_RS26210 0.41 -0.7 1,238,468 - RR42_RS26210 0.41 -0.9 1,238,479 + RR42_RS26210 0.45 -2.3 1,238,499 + RR42_RS26210 0.51 +2.7 1,238,548 + RR42_RS26210 0.66 -0.3 1,238,549 - RR42_RS26210 0.67 +0.5 1,238,549 - RR42_RS26210 0.67 +0.4 1,238,549 - RR42_RS26210 0.67 +0.2 1,238,549 - RR42_RS26210 0.67 -0.8 1,238,549 - RR42_RS26210 0.67 -2.1 1,238,549 - RR42_RS26210 0.67 +1.1 1,238,551 + RR42_RS26210 0.67 +0.6 1,238,552 - RR42_RS26210 0.68 -0.3 1,238,552 - RR42_RS26210 0.68 +0.3 1,238,563 + RR42_RS26210 0.71 +0.1 1,238,564 - RR42_RS26210 0.71 -0.0 1,238,575 + RR42_RS26210 0.75 -1.2 1,238,575 + RR42_RS26210 0.75 -2.1 1,238,812 + -0.4 1,239,781 + +1.3 1,239,781 + -1.7 1,239,781 + +0.1 1,239,781 + -0.3 1,239,781 + -1.1 1,239,781 + -1.2 1,239,781 + -1.0 1,239,782 - +0.1 1,239,783 + -0.3 1,239,783 + -1.4 1,239,824 - +0.1 1,239,824 - -0.8 1,239,952 + +0.1 1,239,952 + +0.7 1,240,096 + -1.0 1,240,301 + RR42_RS26220 0.32 -0.9 1,240,312 + RR42_RS26220 0.33 -2.2
Or see this region's nucleotide sequence