Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25415

Experiment: R2A with Lomefloxacin 0.001 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Lomefloxacin 0.001 mM
1,040,620	+				+0.2
1,040,620	+				+0.6
1,040,620	+				+0.2
1,040,789	+				-0.0
1,040,790	-				+0.8
1,040,790	-				+1.2
1,040,889	+				+0.4
1,040,924	+				-1.2
1,040,925	-				-1.6
1,040,925	-				+1.8
1,040,925	-				+1.6
1,041,052	-				-1.7
1,041,052	-				-0.8
1,041,249	+				+0.6
1,041,250	-				-0.2
1,041,253	+				-1.0
1,041,254	-				-2.2
1,041,254	-				-0.9
1,041,363	+				-2.1
1,041,364	-				-1.8
1,041,379	-				-0.4
1,041,379	-				+0.5
1,041,379	-				-1.5
1,041,460	-				+1.6
1,041,516	+				-0.8
1,041,576	+				-0.6
1,041,576	+				+1.2
1,041,618	-				+0.8
1,041,637	+				+0.1
1,041,638	-				-0.1
1,041,687	+				+0.8
1,041,688	-				+1.8
1,041,850	+				+0.4
1,041,850	+				+0.5
1,041,856	-				-0.9
1,041,909	+		RR42_RS25415	0.11	-0.0
1,041,909	+		RR42_RS25415	0.11	-1.2
1,041,909	+		RR42_RS25415	0.11	+1.3
1,041,910	-		RR42_RS25415	0.11	-1.1
1,041,912	+		RR42_RS25415	0.11	-1.4
1,041,912	+		RR42_RS25415	0.11	+0.8
1,041,912	+		RR42_RS25415	0.11	+0.3
1,041,913	-		RR42_RS25415	0.11	+1.8
1,041,913	-		RR42_RS25415	0.11	-0.9
1,041,913	-		RR42_RS25415	0.11	-1.0
1,042,061	-		RR42_RS25415	0.16	-0.1
1,042,061	-		RR42_RS25415	0.16	-1.7
1,042,132	-		RR42_RS25415	0.19	-0.9
1,042,150	+		RR42_RS25415	0.19	+1.3
1,042,163	+		RR42_RS25415	0.20	-0.8
1,042,163	+		RR42_RS25415	0.20	+1.2
1,042,164	-		RR42_RS25415	0.20	+0.6
1,042,164	-		RR42_RS25415	0.20	+2.3
1,042,164	-		RR42_RS25415	0.20	+0.5
1,042,164	-		RR42_RS25415	0.20	+1.6
1,042,164	-		RR42_RS25415	0.20	-1.1
1,042,164	-		RR42_RS25415	0.20	+0.4
1,042,246	+		RR42_RS25415	0.23	+0.3
1,042,247	-		RR42_RS25415	0.23	-0.5
1,042,272	+		RR42_RS25415	0.24	+0.7
1,042,319	+		RR42_RS25415	0.25	+0.7
1,042,320	-		RR42_RS25415	0.25	+1.8
1,042,343	-		RR42_RS25415	0.26	-1.1
1,042,343	-		RR42_RS25415	0.26	+1.0
1,042,345	+		RR42_RS25415	0.26	+0.2
1,042,345	+		RR42_RS25415	0.26	+1.5
1,042,345	+		RR42_RS25415	0.26	+0.1
1,042,467	+		RR42_RS25415	0.31	-0.2
1,042,535	+		RR42_RS25415	0.33	-1.1
1,042,535	+		RR42_RS25415	0.33	+0.2
1,042,536	-		RR42_RS25415	0.33	+0.4
1,042,536	-		RR42_RS25415	0.33	+1.2
1,042,536	-		RR42_RS25415	0.33	+1.2
1,042,536	-		RR42_RS25415	0.33	-0.6
1,042,536	-		RR42_RS25415	0.33	+0.4
1,042,544	-		RR42_RS25415	0.33	+1.4
1,042,567	+		RR42_RS25415	0.34	+1.0
1,042,649	-		RR42_RS25415	0.37	-1.4
1,042,723	+		RR42_RS25415	0.40	+0.7
1,042,723	+		RR42_RS25415	0.40	-1.4
1,042,745	+		RR42_RS25415	0.41	-0.7
1,042,746	-		RR42_RS25415	0.41	+1.6
1,042,756	-		RR42_RS25415	0.41	+2.5
1,042,775	+		RR42_RS25415	0.42	+0.3
1,042,775	+		RR42_RS25415	0.42	+0.1
1,042,776	-		RR42_RS25415	0.42	+1.6
1,042,776	-		RR42_RS25415	0.42	-0.5
1,042,776	-		RR42_RS25415	0.42	+0.6
1,042,777	+		RR42_RS25415	0.42	+0.5
1,042,777	+		RR42_RS25415	0.42	+0.1
1,042,777	+		RR42_RS25415	0.42	+1.4
1,042,777	+		RR42_RS25415	0.42	-0.1
1,042,778	-		RR42_RS25415	0.42	+0.0
1,042,860	+		RR42_RS25415	0.45	+0.0
1,042,861	-		RR42_RS25415	0.45	-0.1
1,042,861	-		RR42_RS25415	0.45	-2.6
1,042,868	+		RR42_RS25415	0.45	+0.5
1,042,885	-		RR42_RS25415	0.46	+0.4
1,042,885	-		RR42_RS25415	0.46	-0.5
1,042,916	+		RR42_RS25415	0.47	-1.9
1,042,979	+		RR42_RS25415	0.49	-1.1
1,042,979	+		RR42_RS25415	0.49	-1.9
1,042,980	-		RR42_RS25415	0.49	-0.1
1,042,980	-		RR42_RS25415	0.49	-0.8
1,042,980	-		RR42_RS25415	0.49	+0.8
1,042,980	-		RR42_RS25415	0.49	+0.3
1,042,981	+		RR42_RS25415	0.49	+0.1
1,042,982	-		RR42_RS25415	0.49	+0.4
1,042,982	-		RR42_RS25415	0.49	+2.8
1,043,043	+		RR42_RS25415	0.51	-0.9
1,043,043	+		RR42_RS25415	0.51	+0.8
1,043,043	+		RR42_RS25415	0.51	-0.9
1,043,044	-		RR42_RS25415	0.52	-1.8
1,043,075	-		RR42_RS25415	0.53	+0.3
1,043,113	+		RR42_RS25415	0.54	-0.8
1,043,116	-		RR42_RS25415	0.54	-0.6
1,043,125	+		RR42_RS25415	0.54	-1.0
1,043,140	+		RR42_RS25415	0.55	-0.6
1,043,141	-		RR42_RS25415	0.55	+0.2
1,043,141	-		RR42_RS25415	0.55	+2.6
1,043,203	-		RR42_RS25415	0.57	+1.8
1,043,203	-		RR42_RS25415	0.57	-0.0
1,043,203	-		RR42_RS25415	0.57	+0.4
1,043,204	+		RR42_RS25415	0.57	+0.9
1,043,204	+		RR42_RS25415	0.57	+0.9
1,043,204	+		RR42_RS25415	0.57	+1.2
1,043,531	-		RR42_RS25415	0.69	+1.8
1,043,610	-		RR42_RS25415	0.72	-0.0
1,043,610	-		RR42_RS25415	0.72	-0.3
1,043,610	-		RR42_RS25415	0.72	+1.7
1,043,647	+		RR42_RS25415	0.73	-1.3
1,043,648	-		RR42_RS25415	0.73	+0.0
1,043,683	+		RR42_RS25415	0.75	-0.4
1,043,684	-		RR42_RS25415	0.75	+0.5
1,043,741	-		RR42_RS25415	0.77	+1.6
1,043,754	+		RR42_RS25415	0.77	-0.8
1,043,754	+		RR42_RS25415	0.77	+1.0
1,043,772	+		RR42_RS25415	0.78	+0.8
1,043,773	-		RR42_RS25415	0.78	-1.8
1,043,849	-		RR42_RS25415	0.81	+0.2
1,043,849	-		RR42_RS25415	0.81	+0.5
1,044,008	+		RR42_RS25415	0.86	-0.0
1,044,009	-		RR42_RS25415	0.86	+0.5
1,044,009	-		RR42_RS25415	0.86	-0.1
1,044,009	-		RR42_RS25415	0.86	+0.8
1,044,009	-		RR42_RS25415	0.86	-0.6
1,044,033	+		RR42_RS25415	0.87	-0.8
1,044,034	-		RR42_RS25415	0.87	-1.7
1,044,134	+				+0.8
1,044,135	-				-0.8
1,044,135	-				-0.4
1,044,135	-				+0.3
1,044,173	-				+0.4
1,044,218	+				-2.0
1,044,279	+				+0.3
1,044,279	+				-0.8
1,044,279	+				+0.0
1,044,280	-				+0.1
1,044,286	+				+1.0
1,044,286	+				-0.7
1,044,287	-				-1.6
1,044,287	-				-0.4
1,044,287	-				+0.9
1,044,355	+				+0.0
1,044,366	+				-0.1
1,044,445	+				+2.2
1,044,545	+				+0.2
1,044,546	-				+0.0
1,044,546	-				-1.1
1,044,546	-				-0.6
1,044,673	+				+0.7
1,044,674	-				+2.8
1,044,674	-				-1.8
1,044,674	-				-0.1
1,044,674	-				+0.0
1,044,676	+				-0.7
1,044,676	+				+0.8
1,044,677	-				+0.7
1,044,677	-				+0.2
1,044,678	+				-0.0
1,044,678	+				-1.5
1,044,678	+				+0.9
1,044,678	+				-0.8
1,044,678	+				+0.8
1,044,678	+				+3.8
1,044,678	+				-1.5
1,044,679	-				-0.9
1,044,679	-				+0.4
1,044,699	-				-1.6
1,044,722	+				-0.2
1,044,722	+				+0.1
1,044,722	+				-1.8
1,044,722	+				+0.1
1,044,723	-				-0.3
1,044,723	-				+0.4
1,044,745	+				-1.9
1,044,746	-				-0.3
1,044,746	-				-1.8
1,044,813	+				+1.8
1,044,933	-				-0.3
1,044,933	-				-1.7
1,044,933	-				+1.0
1,044,933	-				+0.4
1,044,935	+				+0.2
1,044,935	+				-1.3
1,044,935	+				+1.2
1,044,936	-				-0.7
1,044,944	+				-0.7
1,044,944	+				-1.6
1,044,945	-				+1.0
1,044,945	-				-0.4
1,044,945	-				-0.1
1,044,945	-				+0.0
1,044,954	+				-0.4
1,044,954	+				-0.3
1,044,954	+				+0.5
1,044,955	-				-0.1
1,044,995	-				-0.0
1,044,999	+				-0.7
1,044,999	+				+1.2
1,044,999	+				-0.9
1,044,999	+				+6.4
1,045,000	-				-0.3
1,045,087	-				-0.2
1,045,281	+				-0.6
1,045,282	-				+1.4