Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24945 and RR42_RS24950 are separated by 142 nucleotides RR42_RS24950 and RR42_RS24955 are separated by 245 nucleotides
RR42_RS24945: RR42_RS24945 - hypothetical protein, at 934,214 to 935,179
_RS24945
RR42_RS24950: RR42_RS24950 - TetR family transcriptional regulator, at 935,322 to 935,921
_RS24950
RR42_RS24955: RR42_RS24955 - LysR family transcriptional regulator, at 936,167 to 937,069
_RS24955
Position (kb) 935
936 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 934.474 kb on + strand, within RR42_RS24945 at 934.474 kb on + strand, within RR42_RS24945 at 934.475 kb on - strand, within RR42_RS24945 at 934.532 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.726 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.757 kb on + strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.758 kb on - strand, within RR42_RS24945 at 934.846 kb on - strand, within RR42_RS24945 at 935.341 kb on - strand at 935.341 kb on - strand at 935.597 kb on - strand, within RR42_RS24950 at 935.771 kb on - strand, within RR42_RS24950 at 935.773 kb on + strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.774 kb on - strand, within RR42_RS24950 at 935.834 kb on - strand, within RR42_RS24950 at 935.927 kb on - strand at 935.927 kb on - strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.966 kb on + strand at 935.982 kb on + strand at 936.137 kb on + strand at 936.138 kb on - strand at 936.425 kb on + strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.426 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.510 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.670 kb on - strand, within RR42_RS24955 at 936.738 kb on - strand, within RR42_RS24955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 934,474 + RR42_RS24945 0.27 -0.0 934,474 + RR42_RS24945 0.27 -0.1 934,475 - RR42_RS24945 0.27 +1.2 934,532 + RR42_RS24945 0.33 +1.9 934,726 + RR42_RS24945 0.53 -1.1 934,726 + RR42_RS24945 0.53 -1.9 934,726 + RR42_RS24945 0.53 +2.3 934,757 + RR42_RS24945 0.56 -0.4 934,757 + RR42_RS24945 0.56 +1.1 934,757 + RR42_RS24945 0.56 -1.4 934,758 - RR42_RS24945 0.56 +0.1 934,758 - RR42_RS24945 0.56 +0.8 934,758 - RR42_RS24945 0.56 +2.7 934,846 - RR42_RS24945 0.65 -0.9 935,341 - -1.2 935,341 - -0.3 935,597 - RR42_RS24950 0.46 -0.3 935,771 - RR42_RS24950 0.75 +0.8 935,773 + RR42_RS24950 0.75 -2.6 935,774 - RR42_RS24950 0.75 -2.3 935,774 - RR42_RS24950 0.75 -0.1 935,774 - RR42_RS24950 0.75 -1.2 935,834 - RR42_RS24950 0.85 -2.3 935,927 - +0.1 935,927 - -0.4 935,966 + -0.8 935,966 + -0.8 935,966 + -0.1 935,966 + +1.1 935,982 + +0.3 936,137 + +3.1 936,138 - -0.3 936,425 + RR42_RS24955 0.29 +0.8 936,426 - RR42_RS24955 0.29 -1.6 936,426 - RR42_RS24955 0.29 +0.5 936,510 - RR42_RS24955 0.38 +1.2 936,510 - RR42_RS24955 0.38 -0.9 936,510 - RR42_RS24955 0.38 +1.1 936,510 - RR42_RS24955 0.38 -2.1 936,670 - RR42_RS24955 0.56 +0.4 936,670 - RR42_RS24955 0.56 -1.0 936,738 - RR42_RS24955 0.63 +0.1
Or see this region's nucleotide sequence