Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24565

Experiment: R2A with Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24560 and RR42_RS24565 are separated by 208 nucleotidesRR42_RS24565 and RR42_RS24570 are separated by 13 nucleotides RR42_RS24560: RR42_RS24560 - alcohol dehydrogenase, at 842,443 to 843,612 _RS24560 RR42_RS24565: RR42_RS24565 - monooxygenase, at 843,821 to 845,275 _RS24565 RR42_RS24570: RR42_RS24570 - alpha/beta hydrolase, at 845,289 to 846,266 _RS24570 Position (kb) 843 844 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 842.902 kb on - strand, within RR42_RS24560at 842.902 kb on - strand, within RR42_RS24560at 842.960 kb on - strand, within RR42_RS24560at 843.062 kb on - strand, within RR42_RS24560at 843.062 kb on - strand, within RR42_RS24560at 843.062 kb on - strand, within RR42_RS24560at 843.125 kb on + strand, within RR42_RS24560at 843.141 kb on - strand, within RR42_RS24560at 843.257 kb on - strand, within RR42_RS24560at 843.427 kb on - strand, within RR42_RS24560at 843.546 kb on - strandat 843.607 kb on + strandat 843.746 kb on + strandat 843.746 kb on + strandat 843.747 kb on - strandat 843.747 kb on - strandat 843.763 kb on - strandat 843.840 kb on - strandat 843.840 kb on - strandat 843.972 kb on - strand, within RR42_RS24565at 844.007 kb on + strand, within RR42_RS24565at 844.008 kb on - strand, within RR42_RS24565at 844.049 kb on + strand, within RR42_RS24565at 844.076 kb on + strand, within RR42_RS24565at 844.292 kb on + strand, within RR42_RS24565at 844.293 kb on - strand, within RR42_RS24565at 844.293 kb on - strand, within RR42_RS24565at 844.379 kb on + strand, within RR42_RS24565at 844.380 kb on - strand, within RR42_RS24565at 844.670 kb on + strand, within RR42_RS24565at 844.670 kb on + strand, within RR42_RS24565at 844.671 kb on - strand, within RR42_RS24565at 844.710 kb on - strand, within RR42_RS24565at 844.710 kb on - strand, within RR42_RS24565at 844.925 kb on + strand, within RR42_RS24565at 844.970 kb on + strand, within RR42_RS24565at 844.970 kb on + strand, within RR42_RS24565at 844.971 kb on - strand, within RR42_RS24565at 845.033 kb on + strand, within RR42_RS24565at 845.034 kb on - strand, within RR42_RS24565at 845.034 kb on - strand, within RR42_RS24565at 845.034 kb on - strand, within RR42_RS24565at 845.111 kb on + strand, within RR42_RS24565at 845.111 kb on + strand, within RR42_RS24565at 845.112 kb on - strand, within RR42_RS24565at 845.112 kb on - strand, within RR42_RS24565at 845.112 kb on - strand, within RR42_RS24565at 845.112 kb on - strand, within RR42_RS24565at 845.174 kb on + strandat 845.174 kb on + strandat 845.175 kb on - strandat 845.318 kb on - strandat 845.382 kb on + strandat 845.674 kb on - strand, within RR42_RS24570at 845.744 kb on - strand, within RR42_RS24570at 845.813 kb on + strand, within RR42_RS24570at 845.853 kb on + strand, within RR42_RS24570at 845.854 kb on - strand, within RR42_RS24570at 845.864 kb on - strand, within RR42_RS24570at 845.864 kb on - strand, within RR42_RS24570at 845.864 kb on - strand, within RR42_RS24570at 845.898 kb on - strand, within RR42_RS24570at 845.898 kb on - strand, within RR42_RS24570at 845.980 kb on - strand, within RR42_RS24570at 846.028 kb on + strand, within RR42_RS24570at 846.062 kb on + strand, within RR42_RS24570at 846.108 kb on + strand, within RR42_RS24570at 846.220 kb on + strandat 846.235 kb on + strandat 846.236 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM
remove
842,902 - RR42_RS24560 0.39 -0.6
842,902 - RR42_RS24560 0.39 +0.1
842,960 - RR42_RS24560 0.44 +0.9
843,062 - RR42_RS24560 0.53 -0.2
843,062 - RR42_RS24560 0.53 -0.7
843,062 - RR42_RS24560 0.53 -0.9
843,125 + RR42_RS24560 0.58 -1.6
843,141 - RR42_RS24560 0.60 -0.5
843,257 - RR42_RS24560 0.70 -0.1
843,427 - RR42_RS24560 0.84 -1.7
843,546 - -1.6
843,607 + -1.5
843,746 + -0.0
843,746 + -0.8
843,747 - -0.4
843,747 - -0.5
843,763 - -0.7
843,840 - +1.7
843,840 - +0.4
843,972 - RR42_RS24565 0.10 +0.7
844,007 + RR42_RS24565 0.13 -1.5
844,008 - RR42_RS24565 0.13 +0.7
844,049 + RR42_RS24565 0.16 +1.8
844,076 + RR42_RS24565 0.18 -0.3
844,292 + RR42_RS24565 0.32 +0.1
844,293 - RR42_RS24565 0.32 -0.6
844,293 - RR42_RS24565 0.32 -0.5
844,379 + RR42_RS24565 0.38 -0.1
844,380 - RR42_RS24565 0.38 -0.2
844,670 + RR42_RS24565 0.58 +0.4
844,670 + RR42_RS24565 0.58 -0.0
844,671 - RR42_RS24565 0.58 +0.4
844,710 - RR42_RS24565 0.61 -1.4
844,710 - RR42_RS24565 0.61 +0.8
844,925 + RR42_RS24565 0.76 -0.9
844,970 + RR42_RS24565 0.79 +0.2
844,970 + RR42_RS24565 0.79 -0.8
844,971 - RR42_RS24565 0.79 +0.9
845,033 + RR42_RS24565 0.83 -0.8
845,034 - RR42_RS24565 0.83 -1.1
845,034 - RR42_RS24565 0.83 -0.0
845,034 - RR42_RS24565 0.83 +0.7
845,111 + RR42_RS24565 0.89 +0.1
845,111 + RR42_RS24565 0.89 +0.5
845,112 - RR42_RS24565 0.89 -0.7
845,112 - RR42_RS24565 0.89 +1.1
845,112 - RR42_RS24565 0.89 -0.9
845,112 - RR42_RS24565 0.89 -0.9
845,174 + +0.2
845,174 + +0.1
845,175 - -0.0
845,318 - -0.8
845,382 + -1.5
845,674 - RR42_RS24570 0.39 +0.2
845,744 - RR42_RS24570 0.47 +1.2
845,813 + RR42_RS24570 0.54 -0.0
845,853 + RR42_RS24570 0.58 -0.8
845,854 - RR42_RS24570 0.58 +1.3
845,864 - RR42_RS24570 0.59 +1.1
845,864 - RR42_RS24570 0.59 -1.1
845,864 - RR42_RS24570 0.59 -0.2
845,898 - RR42_RS24570 0.62 -0.1
845,898 - RR42_RS24570 0.62 +0.8
845,980 - RR42_RS24570 0.71 -3.5
846,028 + RR42_RS24570 0.76 +1.4
846,062 + RR42_RS24570 0.79 -0.1
846,108 + RR42_RS24570 0.84 +2.4
846,220 + -0.2
846,235 + -0.3
846,236 - +0.3

Or see this region's nucleotide sequence