Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24545 and RR42_RS24550 are separated by 714 nucleotides
RR42_RS24545: RR42_RS24545 - hypothetical protein, at 837,567 to 839,207
_RS24545
RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104
_RS24550
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 836.568 kb on + strand at 836.569 kb on - strand at 836.569 kb on - strand at 836.620 kb on + strand at 836.620 kb on + strand at 836.673 kb on + strand at 836.730 kb on + strand at 836.732 kb on + strand at 836.733 kb on - strand at 836.941 kb on - strand at 837.161 kb on + strand at 837.161 kb on + strand at 837.162 kb on - strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.180 kb on - strand at 837.180 kb on - strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.187 kb on + strand at 837.293 kb on - strand at 837.293 kb on - strand at 837.305 kb on + strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.339 kb on - strand at 837.369 kb on - strand at 837.405 kb on - strand at 837.408 kb on + strand at 837.408 kb on + strand at 837.409 kb on - strand at 837.450 kb on + strand at 837.450 kb on + strand at 837.529 kb on + strand at 837.653 kb on - strand at 837.745 kb on + strand, within RR42_RS24545 at 837.746 kb on - strand, within RR42_RS24545 at 837.746 kb on - strand, within RR42_RS24545 at 837.751 kb on - strand, within RR42_RS24545 at 837.871 kb on - strand, within RR42_RS24545 at 837.910 kb on + strand, within RR42_RS24545 at 837.911 kb on - strand, within RR42_RS24545 at 837.994 kb on + strand, within RR42_RS24545 at 837.994 kb on + strand, within RR42_RS24545 at 838.064 kb on - strand, within RR42_RS24545 at 838.182 kb on - strand, within RR42_RS24545 at 838.223 kb on - strand, within RR42_RS24545 at 838.223 kb on - strand, within RR42_RS24545 at 838.356 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.444 kb on + strand, within RR42_RS24545 at 838.444 kb on + strand, within RR42_RS24545 at 838.781 kb on - strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.808 kb on + strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.888 kb on + strand, within RR42_RS24545 at 838.889 kb on - strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 839.114 kb on - strand at 839.365 kb on + strand at 839.365 kb on + strand at 839.894 kb on + strand at 839.895 kb on - strand at 839.971 kb on - strand, within RR42_RS24550 at 840.064 kb on - strand, within RR42_RS24550 at 840.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 836,568 + +2.1 836,569 - +0.3 836,569 - +0.9 836,620 + -0.0 836,620 + -0.4 836,673 + -0.1 836,730 + +0.8 836,732 + -3.1 836,733 - +1.2 836,941 - +0.1 837,161 + -0.6 837,161 + +2.8 837,162 - -0.8 837,179 + -1.7 837,179 + -0.1 837,179 + -3.3 837,180 - +0.2 837,180 - +1.6 837,183 + -2.5 837,183 + -0.1 837,183 + -1.0 837,184 - +1.0 837,184 - +1.0 837,184 - +0.3 837,187 + -0.7 837,293 - +1.3 837,293 - +0.3 837,305 + +0.0 837,306 - +0.7 837,306 - -2.8 837,306 - +0.5 837,339 - -0.1 837,369 - -1.2 837,405 - -0.1 837,408 + +1.5 837,408 + -2.3 837,409 - +0.7 837,450 + -0.9 837,450 + +0.4 837,529 + -0.3 837,653 - -0.8 837,745 + RR42_RS24545 0.11 -0.8 837,746 - RR42_RS24545 0.11 +1.7 837,746 - RR42_RS24545 0.11 +0.5 837,751 - RR42_RS24545 0.11 +2.4 837,871 - RR42_RS24545 0.19 -0.0 837,910 + RR42_RS24545 0.21 +1.9 837,911 - RR42_RS24545 0.21 -0.5 837,994 + RR42_RS24545 0.26 -0.1 837,994 + RR42_RS24545 0.26 +1.7 838,064 - RR42_RS24545 0.30 -0.8 838,182 - RR42_RS24545 0.37 -0.7 838,223 - RR42_RS24545 0.40 -0.5 838,223 - RR42_RS24545 0.40 -0.7 838,356 - RR42_RS24545 0.48 -1.2 838,442 - RR42_RS24545 0.53 -0.3 838,442 - RR42_RS24545 0.53 -1.3 838,442 - RR42_RS24545 0.53 -1.3 838,444 + RR42_RS24545 0.53 -0.1 838,444 + RR42_RS24545 0.53 -0.1 838,781 - RR42_RS24545 0.74 -0.8 838,792 + RR42_RS24545 0.75 -1.1 838,792 + RR42_RS24545 0.75 -1.9 838,792 + RR42_RS24545 0.75 -1.3 838,808 + RR42_RS24545 0.76 -0.7 838,811 - RR42_RS24545 0.76 -1.2 838,811 - RR42_RS24545 0.76 +0.1 838,811 - RR42_RS24545 0.76 +0.2 838,888 + RR42_RS24545 0.80 -0.4 838,889 - RR42_RS24545 0.81 +1.0 838,937 + RR42_RS24545 0.83 +0.3 838,937 + RR42_RS24545 0.83 -0.3 838,938 - RR42_RS24545 0.84 -1.8 838,938 - RR42_RS24545 0.84 -0.4 839,114 - -0.4 839,365 + +0.9 839,365 + -0.3 839,894 + +0.3 839,895 - -0.9 839,971 - RR42_RS24550 0.27 +1.7 840,064 - RR42_RS24550 0.78 +0.5 840,092 + -1.3
Or see this region's nucleotide sequence