Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23345 and RR42_RS23350 are separated by 296 nucleotides RR42_RS23350 and RR42_RS23355 are separated by 126 nucleotides RR42_RS23355 and RR42_RS23360 are separated by 34 nucleotides
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
RR42_RS23350: RR42_RS23350 - flagellar biosynthesis protein FliR, at 569,517 to 570,302
_RS23350
RR42_RS23355: RR42_RS23355 - flagellar biosynthetic protein FliQ, at 570,429 to 570,698
_RS23355
RR42_RS23360: RR42_RS23360 - flagellar biosynthesis protein flip, at 570,733 to 571,575
_RS23360
Position (kb) 569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.862 kb on - strand, within RR42_RS23345 at 569.202 kb on - strand at 569.358 kb on + strand at 569.358 kb on + strand at 569.435 kb on + strand at 569.435 kb on + strand at 569.466 kb on + strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.484 kb on - strand at 569.553 kb on - strand at 569.959 kb on + strand, within RR42_RS23350 at 569.959 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.274 kb on + strand at 570.472 kb on + strand, within RR42_RS23355 at 570.473 kb on - strand, within RR42_RS23355 at 570.682 kb on - strand at 570.871 kb on + strand, within RR42_RS23360 at 570.910 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.134 kb on - strand, within RR42_RS23360 at 571.145 kb on + strand, within RR42_RS23360 at 571.146 kb on - strand, within RR42_RS23360
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 568,667 + RR42_RS23345 0.35 -3.0 568,667 + RR42_RS23345 0.35 +0.3 568,667 + RR42_RS23345 0.35 -0.4 568,667 + RR42_RS23345 0.35 +2.5 568,668 - RR42_RS23345 0.35 +2.8 568,668 - RR42_RS23345 0.35 -2.1 568,668 - RR42_RS23345 0.35 +0.5 568,862 - RR42_RS23345 0.58 -1.0 569,202 - -0.2 569,358 + +1.1 569,358 + -0.2 569,435 + -0.4 569,435 + +2.1 569,466 + +0.3 569,467 - +0.5 569,467 - -2.1 569,467 - -2.5 569,467 - -1.2 569,484 - +1.0 569,553 - +0.1 569,959 + RR42_RS23350 0.56 -1.5 569,959 + RR42_RS23350 0.56 -0.8 570,066 + RR42_RS23350 0.70 -0.9 570,066 + RR42_RS23350 0.70 +1.1 570,066 + RR42_RS23350 0.70 +0.2 570,067 - RR42_RS23350 0.70 -2.1 570,067 - RR42_RS23350 0.70 +0.6 570,274 + -0.8 570,472 + RR42_RS23355 0.16 -2.0 570,473 - RR42_RS23355 0.16 +1.3 570,682 - +0.3 570,871 + RR42_RS23360 0.16 +0.3 570,910 - RR42_RS23360 0.21 -0.1 571,134 - RR42_RS23360 0.48 -0.3 571,134 - RR42_RS23360 0.48 -0.8 571,145 + RR42_RS23360 0.49 -1.3 571,146 - RR42_RS23360 0.49 -0.9
Or see this region's nucleotide sequence