Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22325 and RR42_RS22330 are separated by 31 nucleotides RR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides RR42_RS22335 and RR42_RS22340 are separated by 32 nucleotides
RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265
_RS22325
RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800
_RS22330
RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492
_RS22335
RR42_RS22340: RR42_RS22340 - peptidase, at 352,525 to 353,808
_RS22340
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 350.299 kb on - strand at 350.622 kb on + strand, within RR42_RS22330 at 350.622 kb on + strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.623 kb on - strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.679 kb on + strand, within RR42_RS22330 at 350.871 kb on + strand at 350.872 kb on - strand at 351.001 kb on - strand at 351.005 kb on - strand at 351.064 kb on + strand at 351.155 kb on + strand at 351.156 kb on - strand at 351.159 kb on + strand at 351.159 kb on + strand at 351.230 kb on + strand at 351.241 kb on + strand at 351.242 kb on - strand at 351.506 kb on - strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 351.559 kb on + strand, within RR42_RS22335 at 352.031 kb on - strand, within RR42_RS22335 at 352.031 kb on - strand, within RR42_RS22335 at 352.032 kb on - strand, within RR42_RS22335 at 352.150 kb on + strand, within RR42_RS22335 at 352.237 kb on + strand, within RR42_RS22335 at 352.237 kb on + strand, within RR42_RS22335 at 352.238 kb on - strand, within RR42_RS22335 at 352.494 kb on - strand at 352.524 kb on - strand at 352.524 kb on - strand at 352.590 kb on - strand at 352.592 kb on + strand at 352.592 kb on + strand at 352.592 kb on + strand at 352.593 kb on - strand at 352.593 kb on - strand at 352.808 kb on + strand, within RR42_RS22340 at 352.828 kb on + strand, within RR42_RS22340 at 353.088 kb on + strand, within RR42_RS22340 at 353.089 kb on - strand, within RR42_RS22340 at 353.089 kb on - strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.307 kb on + strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.308 kb on - strand, within RR42_RS22340 at 353.376 kb on - strand, within RR42_RS22340 at 353.475 kb on - strand, within RR42_RS22340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 350,299 - +0.9 350,622 + RR42_RS22330 0.64 +0.1 350,622 + RR42_RS22330 0.64 -0.5 350,623 - RR42_RS22330 0.65 +1.0 350,623 - RR42_RS22330 0.65 +1.7 350,679 + RR42_RS22330 0.76 -0.4 350,679 + RR42_RS22330 0.76 -0.8 350,871 + -0.1 350,872 - +0.3 351,001 - -0.3 351,005 - -0.9 351,064 + -0.3 351,155 + +1.7 351,156 - -0.5 351,159 + -1.0 351,159 + -1.2 351,230 + -1.2 351,241 + +1.4 351,242 - -0.5 351,506 - RR42_RS22335 0.23 -1.3 351,559 + RR42_RS22335 0.27 -1.6 351,559 + RR42_RS22335 0.27 +0.6 351,559 + RR42_RS22335 0.27 -0.0 351,559 + RR42_RS22335 0.27 +0.3 352,031 - RR42_RS22335 0.64 +0.8 352,031 - RR42_RS22335 0.64 -0.9 352,032 - RR42_RS22335 0.64 +0.2 352,150 + RR42_RS22335 0.73 -0.3 352,237 + RR42_RS22335 0.80 -1.0 352,237 + RR42_RS22335 0.80 +1.4 352,238 - RR42_RS22335 0.80 -1.5 352,494 - -2.7 352,524 - -0.8 352,524 - -0.7 352,590 - -1.0 352,592 + +0.4 352,592 + -0.3 352,592 + -0.8 352,593 - -0.8 352,593 - -0.8 352,808 + RR42_RS22340 0.22 -1.7 352,828 + RR42_RS22340 0.24 -1.2 353,088 + RR42_RS22340 0.44 -0.1 353,089 - RR42_RS22340 0.44 -0.4 353,089 - RR42_RS22340 0.44 +2.9 353,307 + RR42_RS22340 0.61 -1.4 353,307 + RR42_RS22340 0.61 +0.9 353,307 + RR42_RS22340 0.61 -0.8 353,307 + RR42_RS22340 0.61 +0.2 353,307 + RR42_RS22340 0.61 -0.4 353,307 + RR42_RS22340 0.61 +0.3 353,307 + RR42_RS22340 0.61 -1.2 353,308 - RR42_RS22340 0.61 -1.8 353,308 - RR42_RS22340 0.61 -1.4 353,308 - RR42_RS22340 0.61 +0.9 353,308 - RR42_RS22340 0.61 -0.2 353,308 - RR42_RS22340 0.61 -2.5 353,308 - RR42_RS22340 0.61 +1.4 353,308 - RR42_RS22340 0.61 -1.7 353,308 - RR42_RS22340 0.61 -1.0 353,376 - RR42_RS22340 0.66 -0.6 353,475 - RR42_RS22340 0.74 +0.7
Or see this region's nucleotide sequence