Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20445

Experiment: R2A with Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20440 and RR42_RS20445 overlap by 4 nucleotidesRR42_RS20445 and RR42_RS20450 are separated by 175 nucleotides RR42_RS20440: RR42_RS20440 - histidine kinase, at 4,426,814 to 4,429,282 _RS20440 RR42_RS20445: RR42_RS20445 - hypothetical protein, at 4,429,279 to 4,429,998 _RS20445 RR42_RS20450: RR42_RS20450 - 16S rRNA methyltransferase, at 4,430,174 to 4,431,526 _RS20450 Position (kb) 4429 4430Strain fitness (log2 ratio) -1 0 1 2 3at 4429.234 kb on - strandat 4430.200 kb on - strandat 4430.368 kb on + strand, within RR42_RS20450at 4430.368 kb on + strand, within RR42_RS20450at 4430.368 kb on + strand, within RR42_RS20450at 4430.368 kb on + strand, within RR42_RS20450at 4430.369 kb on - strand, within RR42_RS20450at 4430.369 kb on - strand, within RR42_RS20450at 4430.382 kb on + strand, within RR42_RS20450at 4430.382 kb on + strand, within RR42_RS20450at 4430.382 kb on + strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.383 kb on - strand, within RR42_RS20450at 4430.551 kb on - strand, within RR42_RS20450at 4430.594 kb on + strand, within RR42_RS20450at 4430.926 kb on - strand, within RR42_RS20450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM
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4,429,234 - +0.2
4,430,200 - +0.5
4,430,368 + RR42_RS20450 0.14 -0.5
4,430,368 + RR42_RS20450 0.14 +0.5
4,430,368 + RR42_RS20450 0.14 -0.7
4,430,368 + RR42_RS20450 0.14 -0.6
4,430,369 - RR42_RS20450 0.14 +1.2
4,430,369 - RR42_RS20450 0.14 -0.9
4,430,382 + RR42_RS20450 0.15 +1.0
4,430,382 + RR42_RS20450 0.15 +1.2
4,430,382 + RR42_RS20450 0.15 +0.8
4,430,383 - RR42_RS20450 0.15 +0.4
4,430,383 - RR42_RS20450 0.15 -0.4
4,430,383 - RR42_RS20450 0.15 +2.9
4,430,383 - RR42_RS20450 0.15 -1.0
4,430,383 - RR42_RS20450 0.15 +0.8
4,430,383 - RR42_RS20450 0.15 +1.4
4,430,551 - RR42_RS20450 0.28 -1.3
4,430,594 + RR42_RS20450 0.31 -0.2
4,430,926 - RR42_RS20450 0.56 -0.3

Or see this region's nucleotide sequence