Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08000 and RR42_RS08005 are separated by 0 nucleotides RR42_RS08005 and RR42_RS08010 are separated by 32 nucleotides RR42_RS08010 and RR42_RS08015 are separated by 2 nucleotides RR42_RS08015 and RR42_RS08020 overlap by 2 nucleotides RR42_RS08020 and RR42_RS08025 are separated by 32 nucleotides
RR42_RS08000: RR42_RS08000 - hypothetical protein, at 1,718,580 to 1,718,795
_RS08000
RR42_RS08005: RR42_RS08005 - hypothetical protein, at 1,718,796 to 1,719,347
_RS08005
RR42_RS08010: RR42_RS08010 - hypothetical protein, at 1,719,380 to 1,719,634
_RS08010
RR42_RS08015: RR42_RS08015 - hypothetical protein, at 1,719,637 to 1,720,380
_RS08015
RR42_RS08020: RR42_RS08020 - hypothetical protein, at 1,720,379 to 1,720,918
_RS08020
RR42_RS08025: RR42_RS08025 - phage Gp37Gp68, at 1,720,951 to 1,721,838
_RS08025
Position (kb) 1719
1720
1721 Strain fitness (log2 ratio) -1
0
1
2 at 1718.808 kb on + strand at 1718.812 kb on + strand at 1718.863 kb on + strand, within RR42_RS08005 at 1718.863 kb on + strand, within RR42_RS08005 at 1718.863 kb on + strand, within RR42_RS08005 at 1719.142 kb on + strand, within RR42_RS08005 at 1719.234 kb on + strand, within RR42_RS08005 at 1719.401 kb on + strand at 1719.632 kb on + strand at 1719.728 kb on + strand, within RR42_RS08015 at 1719.773 kb on + strand, within RR42_RS08015 at 1719.900 kb on + strand, within RR42_RS08015 at 1719.900 kb on + strand, within RR42_RS08015 at 1720.004 kb on + strand, within RR42_RS08015 at 1720.154 kb on + strand, within RR42_RS08015 at 1720.154 kb on + strand, within RR42_RS08015 at 1720.154 kb on + strand, within RR42_RS08015 at 1720.154 kb on + strand, within RR42_RS08015 at 1720.278 kb on + strand, within RR42_RS08015 at 1720.279 kb on - strand, within RR42_RS08015 at 1720.279 kb on - strand, within RR42_RS08015 at 1720.342 kb on + strand at 1720.342 kb on + strand at 1720.342 kb on + strand at 1720.383 kb on - strand at 1720.621 kb on + strand, within RR42_RS08020 at 1720.625 kb on + strand, within RR42_RS08020 at 1720.770 kb on + strand, within RR42_RS08020 at 1720.801 kb on + strand, within RR42_RS08020 at 1720.801 kb on + strand, within RR42_RS08020 at 1720.809 kb on + strand, within RR42_RS08020 at 1720.809 kb on + strand, within RR42_RS08020 at 1720.809 kb on + strand, within RR42_RS08020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 1,718,808 + +0.4 1,718,812 + +0.6 1,718,863 + RR42_RS08005 0.12 +0.9 1,718,863 + RR42_RS08005 0.12 +0.8 1,718,863 + RR42_RS08005 0.12 +0.7 1,719,142 + RR42_RS08005 0.63 +1.6 1,719,234 + RR42_RS08005 0.79 +1.2 1,719,401 + +1.6 1,719,632 + -0.4 1,719,728 + RR42_RS08015 0.12 +1.1 1,719,773 + RR42_RS08015 0.18 +1.1 1,719,900 + RR42_RS08015 0.35 +1.2 1,719,900 + RR42_RS08015 0.35 +1.8 1,720,004 + RR42_RS08015 0.49 +2.4 1,720,154 + RR42_RS08015 0.69 +1.3 1,720,154 + RR42_RS08015 0.69 +0.7 1,720,154 + RR42_RS08015 0.69 +0.6 1,720,154 + RR42_RS08015 0.69 +0.4 1,720,278 + RR42_RS08015 0.86 +0.2 1,720,279 - RR42_RS08015 0.86 +2.3 1,720,279 - RR42_RS08015 0.86 +1.5 1,720,342 + +1.0 1,720,342 + +0.5 1,720,342 + +2.2 1,720,383 - -0.3 1,720,621 + RR42_RS08020 0.45 +0.4 1,720,625 + RR42_RS08020 0.46 +1.8 1,720,770 + RR42_RS08020 0.72 +1.4 1,720,801 + RR42_RS08020 0.78 +1.7 1,720,801 + RR42_RS08020 0.78 +1.6 1,720,809 + RR42_RS08020 0.80 +2.0 1,720,809 + RR42_RS08020 0.80 +0.5 1,720,809 + RR42_RS08020 0.80 +1.0
Or see this region's nucleotide sequence