Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06935

Experiment: R2A with Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06925 and RR42_RS06930 are separated by 251 nucleotidesRR42_RS06930 and RR42_RS06935 are separated by 210 nucleotidesRR42_RS06935 and RR42_RS06940 overlap by 4 nucleotides RR42_RS06925: RR42_RS06925 - hypothetical protein, at 1,489,220 to 1,489,402 _RS06925 RR42_RS06930: RR42_RS06930 - hypothetical protein, at 1,489,654 to 1,489,980 _RS06930 RR42_RS06935: RR42_RS06935 - hypothetical protein, at 1,490,191 to 1,490,961 _RS06935 RR42_RS06940: RR42_RS06940 - DNA methyltransferase, at 1,490,958 to 1,492,754 _RS06940 Position (kb) 1490 1491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1489.213 kb on + strandat 1489.213 kb on + strandat 1489.214 kb on - strandat 1489.349 kb on + strand, within RR42_RS06925at 1489.417 kb on + strandat 1489.418 kb on - strandat 1489.446 kb on + strandat 1489.447 kb on - strandat 1489.501 kb on + strandat 1489.501 kb on + strandat 1489.501 kb on + strandat 1489.605 kb on + strandat 1489.716 kb on + strand, within RR42_RS06930at 1489.717 kb on - strand, within RR42_RS06930at 1489.873 kb on - strand, within RR42_RS06930at 1490.004 kb on + strandat 1490.005 kb on - strandat 1490.076 kb on + strandat 1490.076 kb on + strandat 1490.076 kb on + strandat 1490.077 kb on - strandat 1490.079 kb on + strandat 1490.080 kb on - strandat 1490.080 kb on - strandat 1490.281 kb on + strand, within RR42_RS06935at 1490.346 kb on - strand, within RR42_RS06935at 1490.346 kb on - strand, within RR42_RS06935at 1490.566 kb on + strand, within RR42_RS06935at 1490.566 kb on + strand, within RR42_RS06935at 1490.635 kb on + strand, within RR42_RS06935at 1490.758 kb on + strand, within RR42_RS06935at 1490.894 kb on + strandat 1490.933 kb on + strandat 1490.974 kb on - strandat 1491.168 kb on + strand, within RR42_RS06940at 1491.168 kb on + strand, within RR42_RS06940at 1491.169 kb on - strand, within RR42_RS06940at 1491.333 kb on + strand, within RR42_RS06940at 1491.334 kb on - strand, within RR42_RS06940at 1491.489 kb on + strand, within RR42_RS06940at 1491.512 kb on + strand, within RR42_RS06940at 1491.512 kb on + strand, within RR42_RS06940at 1491.513 kb on - strand, within RR42_RS06940at 1491.513 kb on - strand, within RR42_RS06940at 1491.513 kb on - strand, within RR42_RS06940at 1491.606 kb on + strand, within RR42_RS06940at 1491.807 kb on + strand, within RR42_RS06940at 1491.807 kb on + strand, within RR42_RS06940at 1491.807 kb on + strand, within RR42_RS06940at 1491.808 kb on - strand, within RR42_RS06940at 1491.838 kb on - strand, within RR42_RS06940at 1491.887 kb on + strand, within RR42_RS06940

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM
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1,489,213 + -0.5
1,489,213 + +0.4
1,489,214 - -0.2
1,489,349 + RR42_RS06925 0.70 +1.4
1,489,417 + -1.1
1,489,418 - +0.2
1,489,446 + +0.3
1,489,447 - -2.3
1,489,501 + -0.4
1,489,501 + +0.2
1,489,501 + +0.2
1,489,605 + +1.4
1,489,716 + RR42_RS06930 0.19 -0.5
1,489,717 - RR42_RS06930 0.19 -0.8
1,489,873 - RR42_RS06930 0.67 -0.8
1,490,004 + -0.5
1,490,005 - +1.4
1,490,076 + -0.6
1,490,076 + -0.2
1,490,076 + -0.2
1,490,077 - -3.1
1,490,079 + -0.3
1,490,080 - -2.4
1,490,080 - -0.1
1,490,281 + RR42_RS06935 0.12 +1.1
1,490,346 - RR42_RS06935 0.20 -0.1
1,490,346 - RR42_RS06935 0.20 +1.3
1,490,566 + RR42_RS06935 0.49 +1.3
1,490,566 + RR42_RS06935 0.49 -1.5
1,490,635 + RR42_RS06935 0.58 -2.6
1,490,758 + RR42_RS06935 0.74 +0.3
1,490,894 + -0.2
1,490,933 + +0.5
1,490,974 - +3.0
1,491,168 + RR42_RS06940 0.12 -2.2
1,491,168 + RR42_RS06940 0.12 +0.2
1,491,169 - RR42_RS06940 0.12 -0.8
1,491,333 + RR42_RS06940 0.21 -2.3
1,491,334 - RR42_RS06940 0.21 -0.5
1,491,489 + RR42_RS06940 0.30 -0.7
1,491,512 + RR42_RS06940 0.31 +0.7
1,491,512 + RR42_RS06940 0.31 +0.4
1,491,513 - RR42_RS06940 0.31 -0.2
1,491,513 - RR42_RS06940 0.31 +1.3
1,491,513 - RR42_RS06940 0.31 -1.5
1,491,606 + RR42_RS06940 0.36 -0.2
1,491,807 + RR42_RS06940 0.47 +0.8
1,491,807 + RR42_RS06940 0.47 -0.1
1,491,807 + RR42_RS06940 0.47 -0.9
1,491,808 - RR42_RS06940 0.47 +0.6
1,491,838 - RR42_RS06940 0.49 +0.5
1,491,887 + RR42_RS06940 0.52 -0.7

Or see this region's nucleotide sequence