Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04320 and RR42_RS04325 are separated by 133 nucleotides RR42_RS04325 and RR42_RS04330 are separated by 23 nucleotides RR42_RS04330 and RR42_RS04335 are separated by 236 nucleotides
RR42_RS04320: RR42_RS04320 - cell division protein FtsK, at 959,088 to 961,412
_RS04320
RR42_RS04325: RR42_RS04325 - membrane protein, at 961,546 to 962,184
_RS04325
RR42_RS04330: RR42_RS04330 - lipoprotein, at 962,208 to 962,612
_RS04330
RR42_RS04335: RR42_RS04335 - iron deficiency-induced protein A, at 962,849 to 963,892
_RS04335
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 960.630 kb on + strand, within RR42_RS04320 at 961.002 kb on + strand, within RR42_RS04320 at 961.002 kb on + strand, within RR42_RS04320 at 961.002 kb on + strand, within RR42_RS04320 at 961.110 kb on + strand, within RR42_RS04320 at 961.111 kb on - strand, within RR42_RS04320 at 961.410 kb on + strand at 961.411 kb on - strand at 961.411 kb on - strand at 961.424 kb on + strand at 961.424 kb on + strand at 961.435 kb on + strand at 961.828 kb on + strand, within RR42_RS04325 at 961.828 kb on + strand, within RR42_RS04325 at 961.828 kb on + strand, within RR42_RS04325 at 961.834 kb on + strand, within RR42_RS04325 at 962.657 kb on + strand at 962.703 kb on - strand at 962.703 kb on - strand at 962.717 kb on - strand at 962.777 kb on + strand at 962.823 kb on + strand at 962.823 kb on + strand at 962.823 kb on + strand at 962.857 kb on - strand at 962.857 kb on - strand at 962.954 kb on + strand, within RR42_RS04335 at 962.970 kb on - strand, within RR42_RS04335 at 962.990 kb on + strand, within RR42_RS04335 at 962.991 kb on - strand, within RR42_RS04335
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 960,630 + RR42_RS04320 0.66 +1.8 961,002 + RR42_RS04320 0.82 -0.4 961,002 + RR42_RS04320 0.82 -0.5 961,002 + RR42_RS04320 0.82 +0.0 961,110 + RR42_RS04320 0.87 -0.1 961,111 - RR42_RS04320 0.87 -2.4 961,410 + -1.3 961,411 - -2.9 961,411 - +0.1 961,424 + +1.1 961,424 + +2.8 961,435 + +0.3 961,828 + RR42_RS04325 0.44 -1.4 961,828 + RR42_RS04325 0.44 -3.0 961,828 + RR42_RS04325 0.44 -0.8 961,834 + RR42_RS04325 0.45 -0.9 962,657 + -0.6 962,703 - -0.9 962,703 - +0.5 962,717 - -0.6 962,777 + +0.3 962,823 + -0.4 962,823 + +0.4 962,823 + +0.0 962,857 - -0.5 962,857 - -0.6 962,954 + RR42_RS04335 0.10 +0.0 962,970 - RR42_RS04335 0.12 -1.0 962,990 + RR42_RS04335 0.14 +0.3 962,991 - RR42_RS04335 0.14 -1.5
Or see this region's nucleotide sequence