Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03885 and RR42_RS03890 overlap by 8 nucleotides RR42_RS03890 and RR42_RS03895 overlap by 4 nucleotides RR42_RS03895 and RR42_RS03900 are separated by 29 nucleotides
RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311
_RS03885
RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038
_RS03890
RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667
_RS03895
RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821
_RS03900
Position (kb) 859
860 Strain fitness (log2 ratio) -2
-1
0
1 at 858.300 kb on + strand at 858.301 kb on - strand at 858.318 kb on + strand at 858.319 kb on - strand at 858.319 kb on - strand at 858.515 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.662 kb on - strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.666 kb on - strand, within RR42_RS03890 at 858.750 kb on - strand, within RR42_RS03890 at 859.300 kb on + strand, within RR42_RS03895 at 859.301 kb on - strand, within RR42_RS03895 at 859.456 kb on + strand, within RR42_RS03895 at 859.516 kb on + strand, within RR42_RS03895 at 859.517 kb on - strand, within RR42_RS03895 at 859.844 kb on - strand, within RR42_RS03900 at 860.022 kb on + strand, within RR42_RS03900 at 860.089 kb on + strand, within RR42_RS03900 at 860.090 kb on - strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.184 kb on + strand, within RR42_RS03900 at 860.299 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.464 kb on - strand, within RR42_RS03900 at 860.583 kb on + strand, within RR42_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 858,300 + -0.7 858,301 - -1.1 858,318 + -1.1 858,319 - +0.3 858,319 - -1.2 858,515 + RR42_RS03890 0.29 +0.1 858,661 + RR42_RS03890 0.49 -0.7 858,661 + RR42_RS03890 0.49 -2.0 858,662 - RR42_RS03890 0.49 -1.1 858,665 + RR42_RS03890 0.49 +0.1 858,665 + RR42_RS03890 0.49 -0.6 858,665 + RR42_RS03890 0.49 +0.8 858,666 - RR42_RS03890 0.49 +1.1 858,750 - RR42_RS03890 0.61 -1.6 859,300 + RR42_RS03895 0.42 -0.9 859,301 - RR42_RS03895 0.42 -1.4 859,456 + RR42_RS03895 0.67 +0.9 859,516 + RR42_RS03895 0.76 +0.3 859,517 - RR42_RS03895 0.76 -2.2 859,844 - RR42_RS03900 0.13 -1.1 860,022 + RR42_RS03900 0.29 +0.4 860,089 + RR42_RS03900 0.35 -0.0 860,090 - RR42_RS03900 0.35 -0.5 860,184 + RR42_RS03900 0.43 -0.5 860,184 + RR42_RS03900 0.43 -0.9 860,299 - RR42_RS03900 0.54 +0.3 860,464 - RR42_RS03900 0.68 +0.9 860,464 - RR42_RS03900 0.68 +1.0 860,583 + RR42_RS03900 0.79 +0.4
Or see this region's nucleotide sequence