Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03635 and RR42_RS03640 are separated by 61 nucleotides RR42_RS03640 and RR42_RS03645 are separated by 192 nucleotides RR42_RS03645 and RR42_RS03650 are separated by 95 nucleotides RR42_RS03650 and RR42_RS03655 are separated by 215 nucleotides
RR42_RS03635: RR42_RS03635 - trypsin-like serine protease, at 809,187 to 810,089
_RS03635
RR42_RS03640: RR42_RS03640 - hypothetical protein, at 810,151 to 810,435
_RS03640
RR42_RS03645: RR42_RS03645 - hypothetical protein, at 810,628 to 810,951
_RS03645
RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331
_RS03650
RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921
_RS03655
Position (kb) 810
811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 809.677 kb on - strand, within RR42_RS03635 at 809.890 kb on - strand, within RR42_RS03635 at 809.890 kb on - strand, within RR42_RS03635 at 810.087 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.117 kb on + strand at 810.118 kb on - strand at 810.175 kb on + strand at 810.176 kb on - strand at 810.192 kb on - strand, within RR42_RS03640 at 810.192 kb on - strand, within RR42_RS03640 at 810.193 kb on + strand, within RR42_RS03640 at 810.193 kb on + strand, within RR42_RS03640 at 810.194 kb on - strand, within RR42_RS03640 at 810.206 kb on - strand, within RR42_RS03640 at 810.206 kb on - strand, within RR42_RS03640 at 810.632 kb on + strand at 810.632 kb on + strand at 810.632 kb on + strand at 810.633 kb on - strand at 810.633 kb on - strand at 810.633 kb on - strand at 810.650 kb on + strand at 810.650 kb on + strand at 810.650 kb on + strand at 810.753 kb on + strand, within RR42_RS03645 at 810.753 kb on + strand, within RR42_RS03645 at 810.753 kb on + strand, within RR42_RS03645 at 810.833 kb on + strand, within RR42_RS03645 at 810.834 kb on - strand, within RR42_RS03645 at 810.834 kb on - strand, within RR42_RS03645 at 810.835 kb on + strand, within RR42_RS03645 at 810.835 kb on + strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.836 kb on - strand, within RR42_RS03645 at 810.842 kb on + strand, within RR42_RS03645 at 810.843 kb on - strand, within RR42_RS03645 at 810.950 kb on - strand at 811.055 kb on + strand at 811.056 kb on - strand at 811.071 kb on + strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.072 kb on - strand at 811.286 kb on + strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.287 kb on - strand, within RR42_RS03650 at 811.290 kb on - strand, within RR42_RS03650 at 811.292 kb on + strand, within RR42_RS03650 at 811.329 kb on + strand at 811.330 kb on - strand at 811.330 kb on - strand at 811.359 kb on - strand at 811.415 kb on - strand at 811.495 kb on - strand at 811.541 kb on + strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.542 kb on - strand at 811.614 kb on - strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.799 kb on + strand, within RR42_RS03655 at 811.800 kb on - strand, within RR42_RS03655 at 811.823 kb on + strand, within RR42_RS03655 at 811.824 kb on - strand, within RR42_RS03655
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 809,677 - RR42_RS03635 0.54 -0.1 809,890 - RR42_RS03635 0.78 -0.5 809,890 - RR42_RS03635 0.78 +0.5 810,087 + -0.8 810,117 + -0.5 810,117 + +0.6 810,117 + -0.3 810,117 + +0.7 810,118 - -2.0 810,175 + -0.3 810,176 - +1.1 810,192 - RR42_RS03640 0.14 -0.4 810,192 - RR42_RS03640 0.14 -1.9 810,193 + RR42_RS03640 0.15 -0.0 810,193 + RR42_RS03640 0.15 +0.7 810,194 - RR42_RS03640 0.15 -1.3 810,206 - RR42_RS03640 0.19 +0.7 810,206 - RR42_RS03640 0.19 +0.7 810,632 + -0.7 810,632 + -1.0 810,632 + -1.0 810,633 - -1.2 810,633 - +0.3 810,633 - -0.1 810,650 + -0.1 810,650 + +0.6 810,650 + +1.9 810,753 + RR42_RS03645 0.39 -2.2 810,753 + RR42_RS03645 0.39 -0.7 810,753 + RR42_RS03645 0.39 -0.6 810,833 + RR42_RS03645 0.63 -0.3 810,834 - RR42_RS03645 0.64 -0.7 810,834 - RR42_RS03645 0.64 +2.2 810,835 + RR42_RS03645 0.64 -0.4 810,835 + RR42_RS03645 0.64 -0.8 810,836 - RR42_RS03645 0.64 -0.8 810,836 - RR42_RS03645 0.64 -1.8 810,836 - RR42_RS03645 0.64 -0.7 810,836 - RR42_RS03645 0.64 +0.2 810,842 + RR42_RS03645 0.66 -0.0 810,843 - RR42_RS03645 0.66 +0.4 810,950 - +0.4 811,055 + +0.2 811,056 - -0.7 811,071 + +1.8 811,072 - -1.4 811,072 - -2.7 811,072 - -0.6 811,072 - +2.0 811,286 + RR42_RS03650 0.84 -0.4 811,287 - RR42_RS03650 0.84 -0.6 811,287 - RR42_RS03650 0.84 -0.7 811,290 - RR42_RS03650 0.85 +1.5 811,292 + RR42_RS03650 0.86 -1.7 811,329 + +0.9 811,330 - +0.4 811,330 - -1.3 811,359 - +0.3 811,415 - -1.2 811,495 - -1.6 811,541 + -1.8 811,542 - +1.5 811,542 - -0.8 811,542 - +1.3 811,542 - +0.3 811,542 - -0.4 811,614 - RR42_RS03655 0.18 -1.1 811,620 + RR42_RS03655 0.19 +0.2 811,620 + RR42_RS03655 0.19 -0.7 811,620 + RR42_RS03655 0.19 -0.3 811,621 - RR42_RS03655 0.20 -1.0 811,621 - RR42_RS03655 0.20 +0.4 811,621 - RR42_RS03655 0.20 +0.7 811,799 + RR42_RS03655 0.67 -0.3 811,800 - RR42_RS03655 0.67 -1.0 811,823 + RR42_RS03655 0.74 -0.2 811,824 - RR42_RS03655 0.74 -0.3
Or see this region's nucleotide sequence