Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01235

Experiment: R2A with Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01230 and RR42_RS01235 are separated by 86 nucleotidesRR42_RS01235 and RR42_RS01240 are separated by 122 nucleotides RR42_RS01230: RR42_RS01230 - acetoacetate decarboxylase, at 278,651 to 279,391 _RS01230 RR42_RS01235: RR42_RS01235 - 3-hydroxybutyrate dehydrogenase, at 279,478 to 280,260 _RS01235 RR42_RS01240: RR42_RS01240 - membrane protein, at 280,383 to 281,735 _RS01240 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.696 kb on - strandat 278.831 kb on + strand, within RR42_RS01230at 278.832 kb on - strand, within RR42_RS01230at 278.873 kb on + strand, within RR42_RS01230at 278.874 kb on - strand, within RR42_RS01230at 278.874 kb on - strand, within RR42_RS01230at 278.906 kb on + strand, within RR42_RS01230at 278.906 kb on + strand, within RR42_RS01230at 278.927 kb on + strand, within RR42_RS01230at 278.927 kb on + strand, within RR42_RS01230at 278.927 kb on + strand, within RR42_RS01230at 278.928 kb on - strand, within RR42_RS01230at 278.928 kb on - strand, within RR42_RS01230at 278.942 kb on + strand, within RR42_RS01230at 278.943 kb on - strand, within RR42_RS01230at 278.983 kb on - strand, within RR42_RS01230at 278.983 kb on - strand, within RR42_RS01230at 279.034 kb on + strand, within RR42_RS01230at 279.034 kb on + strand, within RR42_RS01230at 279.056 kb on + strand, within RR42_RS01230at 279.092 kb on + strand, within RR42_RS01230at 279.092 kb on + strand, within RR42_RS01230at 279.152 kb on + strand, within RR42_RS01230at 279.153 kb on - strand, within RR42_RS01230at 279.212 kb on + strand, within RR42_RS01230at 279.212 kb on + strand, within RR42_RS01230at 279.212 kb on + strand, within RR42_RS01230at 279.213 kb on - strand, within RR42_RS01230at 279.213 kb on - strand, within RR42_RS01230at 279.335 kb on + strandat 279.336 kb on - strandat 279.355 kb on - strandat 279.380 kb on + strandat 279.778 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.858 kb on + strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.859 kb on - strand, within RR42_RS01235at 279.862 kb on + strand, within RR42_RS01235at 279.862 kb on + strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.863 kb on - strand, within RR42_RS01235at 279.892 kb on + strand, within RR42_RS01235at 279.892 kb on + strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.893 kb on - strand, within RR42_RS01235at 279.940 kb on + strand, within RR42_RS01235at 279.940 kb on + strand, within RR42_RS01235at 279.941 kb on - strand, within RR42_RS01235at 280.004 kb on - strand, within RR42_RS01235at 280.004 kb on - strand, within RR42_RS01235at 280.231 kb on - strandat 280.249 kb on + strandat 280.249 kb on + strandat 280.249 kb on + strandat 280.250 kb on - strandat 280.250 kb on - strandat 280.259 kb on - strandat 280.417 kb on + strandat 280.418 kb on - strandat 280.418 kb on - strandat 280.418 kb on - strandat 280.441 kb on + strandat 280.442 kb on - strandat 280.593 kb on + strand, within RR42_RS01240at 280.593 kb on + strand, within RR42_RS01240at 280.593 kb on + strand, within RR42_RS01240at 280.641 kb on + strand, within RR42_RS01240at 280.656 kb on + strand, within RR42_RS01240at 280.688 kb on + strand, within RR42_RS01240at 280.689 kb on - strand, within RR42_RS01240at 280.788 kb on + strand, within RR42_RS01240at 280.789 kb on - strand, within RR42_RS01240at 280.789 kb on - strand, within RR42_RS01240at 280.827 kb on + strand, within RR42_RS01240at 280.992 kb on + strand, within RR42_RS01240at 280.992 kb on + strand, within RR42_RS01240at 280.995 kb on + strand, within RR42_RS01240at 280.995 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.000 kb on + strand, within RR42_RS01240at 281.119 kb on - strand, within RR42_RS01240at 281.218 kb on - strand, within RR42_RS01240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM
remove
278,696 - +0.5
278,831 + RR42_RS01230 0.24 +1.1
278,832 - RR42_RS01230 0.24 -1.5
278,873 + RR42_RS01230 0.30 +0.1
278,874 - RR42_RS01230 0.30 +1.3
278,874 - RR42_RS01230 0.30 -0.2
278,906 + RR42_RS01230 0.34 +0.2
278,906 + RR42_RS01230 0.34 +0.6
278,927 + RR42_RS01230 0.37 +0.4
278,927 + RR42_RS01230 0.37 -0.8
278,927 + RR42_RS01230 0.37 -0.5
278,928 - RR42_RS01230 0.37 +1.6
278,928 - RR42_RS01230 0.37 +0.6
278,942 + RR42_RS01230 0.39 -0.5
278,943 - RR42_RS01230 0.39 -0.8
278,983 - RR42_RS01230 0.45 +0.3
278,983 - RR42_RS01230 0.45 +0.1
279,034 + RR42_RS01230 0.52 -0.1
279,034 + RR42_RS01230 0.52 -1.6
279,056 + RR42_RS01230 0.55 +0.4
279,092 + RR42_RS01230 0.60 -1.5
279,092 + RR42_RS01230 0.60 -0.3
279,152 + RR42_RS01230 0.68 +0.1
279,153 - RR42_RS01230 0.68 -0.5
279,212 + RR42_RS01230 0.76 -0.7
279,212 + RR42_RS01230 0.76 -0.7
279,212 + RR42_RS01230 0.76 -0.5
279,213 - RR42_RS01230 0.76 +0.2
279,213 - RR42_RS01230 0.76 -2.0
279,335 + +0.0
279,336 - +1.6
279,355 - -1.0
279,380 + +0.4
279,778 + RR42_RS01235 0.38 +1.1
279,858 + RR42_RS01235 0.49 -2.5
279,858 + RR42_RS01235 0.49 +0.3
279,858 + RR42_RS01235 0.49 +0.6
279,858 + RR42_RS01235 0.49 +1.1
279,858 + RR42_RS01235 0.49 +0.5
279,859 - RR42_RS01235 0.49 -1.2
279,859 - RR42_RS01235 0.49 -2.6
279,859 - RR42_RS01235 0.49 -0.4
279,859 - RR42_RS01235 0.49 +0.8
279,859 - RR42_RS01235 0.49 +1.2
279,859 - RR42_RS01235 0.49 +0.2
279,859 - RR42_RS01235 0.49 +0.5
279,859 - RR42_RS01235 0.49 +0.1
279,859 - RR42_RS01235 0.49 +0.4
279,862 + RR42_RS01235 0.49 -0.8
279,862 + RR42_RS01235 0.49 -0.4
279,863 - RR42_RS01235 0.49 -0.8
279,863 - RR42_RS01235 0.49 -1.3
279,863 - RR42_RS01235 0.49 +0.4
279,892 + RR42_RS01235 0.53 +0.0
279,892 + RR42_RS01235 0.53 -1.0
279,893 - RR42_RS01235 0.53 +0.3
279,893 - RR42_RS01235 0.53 +2.4
279,893 - RR42_RS01235 0.53 +0.7
279,940 + RR42_RS01235 0.59 +1.0
279,940 + RR42_RS01235 0.59 -0.4
279,941 - RR42_RS01235 0.59 -0.7
280,004 - RR42_RS01235 0.67 -0.4
280,004 - RR42_RS01235 0.67 -0.3
280,231 - -0.6
280,249 + -0.9
280,249 + -0.4
280,249 + -1.4
280,250 - -0.6
280,250 - +0.2
280,259 - -0.7
280,417 + -0.2
280,418 - -0.9
280,418 - -0.7
280,418 - +0.5
280,441 + -0.7
280,442 - -0.3
280,593 + RR42_RS01240 0.16 -1.9
280,593 + RR42_RS01240 0.16 -0.9
280,593 + RR42_RS01240 0.16 -1.0
280,641 + RR42_RS01240 0.19 +0.1
280,656 + RR42_RS01240 0.20 -2.0
280,688 + RR42_RS01240 0.23 +0.4
280,689 - RR42_RS01240 0.23 +0.4
280,788 + RR42_RS01240 0.30 +0.4
280,789 - RR42_RS01240 0.30 +1.4
280,789 - RR42_RS01240 0.30 +1.4
280,827 + RR42_RS01240 0.33 -2.3
280,992 + RR42_RS01240 0.45 -1.6
280,992 + RR42_RS01240 0.45 +2.4
280,995 + RR42_RS01240 0.45 -2.6
280,995 + RR42_RS01240 0.45 +0.4
281,000 + RR42_RS01240 0.46 -1.1
281,000 + RR42_RS01240 0.46 +0.7
281,000 + RR42_RS01240 0.46 -1.4
281,000 + RR42_RS01240 0.46 -2.7
281,000 + RR42_RS01240 0.46 +1.6
281,119 - RR42_RS01240 0.54 -0.6
281,218 - RR42_RS01240 0.62 +0.5

Or see this region's nucleotide sequence