Experiment: R2A with Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00015 and RR42_RS00020 are separated by 364 nucleotides RR42_RS00020 and RR42_RS00025 are separated by 225 nucleotides
RR42_RS00015: RR42_RS00015 - DNA gyrase subunit B, at 4,224 to 6,761
_RS00015
RR42_RS00020: RR42_RS00020 - hypothetical protein, at 7,126 to 7,770
_RS00020
RR42_RS00025: RR42_RS00025 - GTPase, at 7,996 to 10,740
_RS00025
Position (kb) 7
8 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 6.838 kb on + strand at 6.863 kb on + strand at 6.931 kb on - strand at 6.952 kb on - strand at 7.032 kb on + strand at 7.033 kb on - strand at 7.037 kb on + strand at 7.037 kb on + strand at 7.093 kb on - strand at 7.098 kb on + strand at 7.099 kb on - strand at 7.099 kb on - strand at 7.151 kb on + strand at 7.304 kb on + strand, within RR42_RS00020 at 7.305 kb on - strand, within RR42_RS00020 at 7.326 kb on + strand, within RR42_RS00020 at 7.329 kb on + strand, within RR42_RS00020 at 7.352 kb on + strand, within RR42_RS00020 at 7.402 kb on - strand, within RR42_RS00020 at 7.607 kb on + strand, within RR42_RS00020 at 7.608 kb on - strand, within RR42_RS00020 at 7.608 kb on - strand, within RR42_RS00020 at 7.642 kb on - strand, within RR42_RS00020 at 7.663 kb on + strand, within RR42_RS00020 at 7.768 kb on + strand at 7.784 kb on + strand at 7.785 kb on - strand at 7.853 kb on - strand at 7.879 kb on - strand at 7.939 kb on + strand at 7.956 kb on + strand at 7.971 kb on + strand at 7.972 kb on - strand at 7.972 kb on - strand at 7.973 kb on + strand at 7.975 kb on + strand at 7.976 kb on - strand at 7.976 kb on - strand at 8.140 kb on + strand at 8.189 kb on + strand at 8.253 kb on + strand at 8.253 kb on + strand at 8.253 kb on + strand at 8.253 kb on + strand at 8.253 kb on + strand at 8.253 kb on + strand at 8.257 kb on + strand at 8.257 kb on + strand at 8.257 kb on + strand at 8.257 kb on + strand at 8.257 kb on + strand at 8.257 kb on + strand at 8.258 kb on - strand at 8.258 kb on - strand at 8.258 kb on - strand at 8.258 kb on - strand at 8.258 kb on - strand at 8.312 kb on + strand, within RR42_RS00025 at 8.465 kb on + strand, within RR42_RS00025 at 8.465 kb on + strand, within RR42_RS00025 at 8.466 kb on - strand, within RR42_RS00025 at 8.466 kb on - strand, within RR42_RS00025 at 8.755 kb on + strand, within RR42_RS00025 at 8.755 kb on + strand, within RR42_RS00025 at 8.758 kb on + strand, within RR42_RS00025 at 8.758 kb on + strand, within RR42_RS00025 at 8.758 kb on + strand, within RR42_RS00025
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.001 mM remove 6,838 + +1.1 6,863 + -0.9 6,931 - -0.7 6,952 - -0.0 7,032 + +2.5 7,033 - -1.0 7,037 + +0.2 7,037 + -1.3 7,093 - +2.1 7,098 + +0.6 7,099 - +1.0 7,099 - -1.4 7,151 + +0.5 7,304 + RR42_RS00020 0.28 +1.5 7,305 - RR42_RS00020 0.28 -0.8 7,326 + RR42_RS00020 0.31 -0.8 7,329 + RR42_RS00020 0.31 +0.3 7,352 + RR42_RS00020 0.35 -1.0 7,402 - RR42_RS00020 0.43 -1.1 7,607 + RR42_RS00020 0.75 +1.3 7,608 - RR42_RS00020 0.75 +0.3 7,608 - RR42_RS00020 0.75 -1.1 7,642 - RR42_RS00020 0.80 +0.3 7,663 + RR42_RS00020 0.83 +0.7 7,768 + +0.4 7,784 + +1.6 7,785 - +1.3 7,853 - +1.3 7,879 - +0.5 7,939 + +1.5 7,956 + +0.3 7,971 + +0.9 7,972 - +1.6 7,972 - -0.5 7,973 + -0.1 7,975 + +1.1 7,976 - +1.7 7,976 - -0.9 8,140 + -2.4 8,189 + +0.1 8,253 + +0.0 8,253 + -0.9 8,253 + +0.5 8,253 + +1.1 8,253 + +1.9 8,253 + +0.8 8,257 + -0.1 8,257 + -0.1 8,257 + +2.6 8,257 + -0.1 8,257 + -0.0 8,257 + -0.2 8,258 - -0.1 8,258 - +2.3 8,258 - -0.3 8,258 - +0.9 8,258 - -0.3 8,312 + RR42_RS00025 0.12 -0.4 8,465 + RR42_RS00025 0.17 +0.6 8,465 + RR42_RS00025 0.17 +0.6 8,466 - RR42_RS00025 0.17 +2.9 8,466 - RR42_RS00025 0.17 -0.5 8,755 + RR42_RS00025 0.28 +0.9 8,755 + RR42_RS00025 0.28 -0.5 8,758 + RR42_RS00025 0.28 +0.0 8,758 + RR42_RS00025 0.28 +0.1 8,758 + RR42_RS00025 0.28 +0.8
Or see this region's nucleotide sequence