Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08000 and MMP_RS08005 are separated by 259 nucleotides MMP_RS08005 and MMP_RS08010 are separated by 11 nucleotides MMP_RS08010 and MMP_RS08015 are separated by 8 nucleotides
MMP_RS08000: MMP_RS08000 - methyl coenzyme M reductase-arginine methyltransferase Mmp10, at 1,508,127 to 1,509,437
_RS08000
MMP_RS08005: MMP_RS08005 - coenzyme-B sulfoethylthiotransferase subunit beta, at 1,509,697 to 1,511,028
_RS08005
MMP_RS08010: MMP_RS08010 - methyl-coenzyme M reductase operon protein D, at 1,511,040 to 1,511,519
_RS08010
MMP_RS08015: MMP_RS08015 - methyl-coenzyme M reductase I operon protein C, at 1,511,528 to 1,512,124
_RS08015
Position (kb)
1509
1510
1511
1512 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1508.702 kb on - strand, within MMP_RS08000 at 1508.720 kb on - strand, within MMP_RS08000 at 1508.790 kb on - strand, within MMP_RS08000 at 1508.791 kb on + strand, within MMP_RS08000 at 1508.974 kb on - strand, within MMP_RS08000 at 1509.014 kb on - strand, within MMP_RS08000 at 1509.014 kb on - strand, within MMP_RS08000 at 1509.015 kb on + strand, within MMP_RS08000 at 1509.016 kb on - strand, within MMP_RS08000 at 1509.021 kb on - strand, within MMP_RS08000 at 1509.021 kb on - strand, within MMP_RS08000 at 1509.237 kb on + strand, within MMP_RS08000 at 1509.438 kb on + strand at 1509.449 kb on + strand at 1509.452 kb on - strand at 1509.453 kb on + strand at 1509.467 kb on + strand at 1509.502 kb on - strand at 1509.533 kb on - strand at 1509.549 kb on + strand at 1509.604 kb on + strand at 1509.604 kb on + strand at 1509.642 kb on - strand at 1509.642 kb on - strand at 1509.643 kb on + strand at 1509.668 kb on - strand at 1509.670 kb on - strand at 1509.696 kb on - strand at 1509.862 kb on + strand at 1510.260 kb on + strand at 1511.447 kb on + strand at 1511.836 kb on - strand at 1511.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 1,508,702 - MMP_RS08000 0.44 -3.1 1,508,720 - MMP_RS08000 0.45 -1.8 1,508,790 - MMP_RS08000 0.51 -3.4 1,508,791 + MMP_RS08000 0.51 -2.3 1,508,974 - MMP_RS08000 0.65 -1.2 1,509,014 - MMP_RS08000 0.68 -2.3 1,509,014 - MMP_RS08000 0.68 -2.5 1,509,015 + MMP_RS08000 0.68 -2.3 1,509,016 - MMP_RS08000 0.68 -2.9 1,509,021 - MMP_RS08000 0.68 -2.4 1,509,021 - MMP_RS08000 0.68 -2.7 1,509,237 + MMP_RS08000 0.85 -2.9 1,509,438 + -3.2 1,509,449 + -3.1 1,509,452 - -2.9 1,509,453 + -4.6 1,509,467 + -1.7 1,509,502 - -0.9 1,509,533 - -1.5 1,509,549 + -1.4 1,509,604 + -3.4 1,509,604 + -3.4 1,509,642 - -3.6 1,509,642 - -2.6 1,509,643 + -3.7 1,509,668 - -2.7 1,509,670 - -0.4 1,509,696 - -3.3 1,509,862 + -1.6 1,510,260 + -1.8 1,511,447 + -3.3 1,511,836 - -2.0 1,511,853 - -1.9
Or see this region's nucleotide sequence