Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07945 and MMP_RS07950 are separated by 38 nucleotides MMP_RS07950 and MMP_RS07955 are separated by 86 nucleotides MMP_RS07955 and MMP_RS07960 are separated by 77 nucleotides MMP_RS07960 and MMP_RS07965 are separated by 21 nucleotides
MMP_RS07945: MMP_RS07945 - 50S ribosomal protein L2, at 1,500,992 to 1,501,714
_RS07945
MMP_RS07950: MMP_RS07950 - 30S ribosomal protein S19, at 1,501,753 to 1,502,238
_RS07950
MMP_RS07955: MMP_RS07955 - FumA C-terminus/TtdB family hydratase beta subunit, at 1,502,325 to 1,502,897
_RS07955
MMP_RS07960: MMP_RS07960 - sugar phosphate isomerase/epimerase, at 1,502,975 to 1,503,781
_RS07960
MMP_RS07965: MMP_RS07965 - NADPH-dependent F420 reductase, at 1,503,803 to 1,504,474
_RS07965
Position (kb)
1502
1503 Strain fitness (log2 ratio)
-2
-1
0
1 at 1502.379 kb on + strand at 1502.385 kb on - strand, within MMP_RS07955 at 1502.386 kb on + strand, within MMP_RS07955 at 1502.386 kb on + strand, within MMP_RS07955 at 1502.390 kb on - strand, within MMP_RS07955 at 1502.483 kb on + strand, within MMP_RS07955 at 1502.622 kb on + strand, within MMP_RS07955 at 1502.635 kb on + strand, within MMP_RS07955 at 1502.738 kb on + strand, within MMP_RS07955 at 1502.761 kb on + strand, within MMP_RS07955 at 1502.793 kb on + strand, within MMP_RS07955 at 1502.793 kb on + strand, within MMP_RS07955 at 1502.836 kb on + strand, within MMP_RS07955 at 1502.925 kb on - strand at 1502.926 kb on + strand at 1502.946 kb on + strand at 1502.951 kb on - strand at 1502.951 kb on - strand at 1503.294 kb on - strand, within MMP_RS07960 at 1503.327 kb on - strand, within MMP_RS07960 at 1503.360 kb on - strand, within MMP_RS07960 at 1503.361 kb on + strand, within MMP_RS07960 at 1503.460 kb on - strand, within MMP_RS07960 at 1503.494 kb on + strand, within MMP_RS07960 at 1503.680 kb on + strand, within MMP_RS07960 at 1503.683 kb on + strand, within MMP_RS07960 at 1503.686 kb on - strand, within MMP_RS07960 at 1503.686 kb on - strand, within MMP_RS07960 at 1503.687 kb on + strand, within MMP_RS07960 at 1503.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 1,502,379 + -0.2 1,502,385 - MMP_RS07955 0.10 +0.1 1,502,386 + MMP_RS07955 0.11 +0.2 1,502,386 + MMP_RS07955 0.11 -2.1 1,502,390 - MMP_RS07955 0.11 -0.7 1,502,483 + MMP_RS07955 0.28 -0.9 1,502,622 + MMP_RS07955 0.52 -0.8 1,502,635 + MMP_RS07955 0.54 -1.4 1,502,738 + MMP_RS07955 0.72 -1.0 1,502,761 + MMP_RS07955 0.76 +0.2 1,502,793 + MMP_RS07955 0.82 -1.1 1,502,793 + MMP_RS07955 0.82 -1.5 1,502,836 + MMP_RS07955 0.89 -1.5 1,502,925 - +0.1 1,502,926 + -1.1 1,502,946 + +0.3 1,502,951 - +0.9 1,502,951 - +0.1 1,503,294 - MMP_RS07960 0.40 -0.9 1,503,327 - MMP_RS07960 0.44 -0.4 1,503,360 - MMP_RS07960 0.48 -0.3 1,503,361 + MMP_RS07960 0.48 -0.9 1,503,460 - MMP_RS07960 0.60 -0.3 1,503,494 + MMP_RS07960 0.64 -0.7 1,503,680 + MMP_RS07960 0.87 +0.3 1,503,683 + MMP_RS07960 0.88 -0.6 1,503,686 - MMP_RS07960 0.88 -0.5 1,503,686 - MMP_RS07960 0.88 -0.6 1,503,687 + MMP_RS07960 0.88 -0.7 1,503,759 + -0.8
Or see this region's nucleotide sequence