Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04065

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04050 and MMP_RS04055 are separated by 15 nucleotidesMMP_RS04055 and MMP_RS04060 are separated by 26 nucleotidesMMP_RS04060 and MMP_RS04065 are separated by 29 nucleotidesMMP_RS04065 and MMP_RS04070 overlap by 4 nucleotides MMP_RS04050: MMP_RS04050 - hypothetical protein, at 767,574 to 767,810 _RS04050 MMP_RS04055: MMP_RS04055 - hypothetical protein, at 767,826 to 768,143 _RS04055 MMP_RS04060: MMP_RS04060 - hypothetical protein, at 768,170 to 768,685 _RS04060 MMP_RS04065: MMP_RS04065 - hypothetical protein, at 768,715 to 770,745 _RS04065 MMP_RS04070: MMP_RS04070 - PEGA domain-containing protein, at 770,742 to 772,682 _RS04070 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -1 0 1at 767.742 kb on - strand, within MMP_RS04050at 767.787 kb on - strandat 767.924 kb on + strand, within MMP_RS04055at 768.292 kb on + strand, within MMP_RS04060at 768.317 kb on - strand, within MMP_RS04060at 768.425 kb on - strand, within MMP_RS04060at 768.426 kb on + strand, within MMP_RS04060at 768.491 kb on - strand, within MMP_RS04060at 768.575 kb on - strand, within MMP_RS04060at 768.576 kb on + strand, within MMP_RS04060at 768.668 kb on + strandat 768.775 kb on - strandat 768.951 kb on + strand, within MMP_RS04065at 768.992 kb on - strand, within MMP_RS04065at 768.993 kb on + strand, within MMP_RS04065at 769.010 kb on - strand, within MMP_RS04065at 769.064 kb on - strand, within MMP_RS04065at 769.103 kb on + strand, within MMP_RS04065at 769.160 kb on - strand, within MMP_RS04065at 769.175 kb on + strand, within MMP_RS04065at 769.219 kb on + strand, within MMP_RS04065at 769.289 kb on - strand, within MMP_RS04065at 769.630 kb on - strand, within MMP_RS04065at 769.754 kb on - strand, within MMP_RS04065at 769.754 kb on - strand, within MMP_RS04065at 769.754 kb on - strand, within MMP_RS04065at 769.758 kb on + strand, within MMP_RS04065at 769.758 kb on + strand, within MMP_RS04065at 769.811 kb on + strand, within MMP_RS04065at 769.811 kb on + strand, within MMP_RS04065at 769.811 kb on + strand, within MMP_RS04065at 769.816 kb on + strand, within MMP_RS04065at 769.816 kb on + strand, within MMP_RS04065at 769.816 kb on + strand, within MMP_RS04065at 769.816 kb on + strand, within MMP_RS04065at 769.829 kb on - strand, within MMP_RS04065at 769.830 kb on + strand, within MMP_RS04065at 769.996 kb on - strand, within MMP_RS04065at 769.996 kb on - strand, within MMP_RS04065at 770.104 kb on - strand, within MMP_RS04065at 770.104 kb on - strand, within MMP_RS04065at 770.105 kb on + strand, within MMP_RS04065at 770.252 kb on - strand, within MMP_RS04065at 770.343 kb on - strand, within MMP_RS04065at 770.415 kb on + strand, within MMP_RS04065at 770.415 kb on + strand, within MMP_RS04065at 770.420 kb on - strand, within MMP_RS04065at 770.432 kb on + strand, within MMP_RS04065at 770.517 kb on + strand, within MMP_RS04065at 770.588 kb on + strandat 770.654 kb on + strandat 770.852 kb on - strandat 770.852 kb on - strandat 770.859 kb on - strandat 770.866 kb on + strandat 770.932 kb on - strandat 770.933 kb on + strandat 770.941 kb on + strand, within MMP_RS04070at 771.059 kb on - strand, within MMP_RS04070at 771.059 kb on - strand, within MMP_RS04070at 771.065 kb on + strand, within MMP_RS04070at 771.148 kb on + strand, within MMP_RS04070at 771.181 kb on - strand, within MMP_RS04070at 771.189 kb on + strand, within MMP_RS04070at 771.223 kb on - strand, within MMP_RS04070at 771.224 kb on + strand, within MMP_RS04070at 771.260 kb on + strand, within MMP_RS04070at 771.319 kb on - strand, within MMP_RS04070at 771.356 kb on - strand, within MMP_RS04070at 771.356 kb on - strand, within MMP_RS04070at 771.356 kb on - strand, within MMP_RS04070at 771.356 kb on - strand, within MMP_RS04070at 771.363 kb on - strand, within MMP_RS04070at 771.378 kb on - strand, within MMP_RS04070at 771.430 kb on + strand, within MMP_RS04070at 771.430 kb on + strand, within MMP_RS04070at 771.430 kb on + strand, within MMP_RS04070at 771.430 kb on + strand, within MMP_RS04070at 771.430 kb on + strand, within MMP_RS04070at 771.434 kb on - strand, within MMP_RS04070at 771.435 kb on + strand, within MMP_RS04070at 771.435 kb on + strand, within MMP_RS04070at 771.500 kb on - strand, within MMP_RS04070at 771.557 kb on - strand, within MMP_RS04070at 771.564 kb on - strand, within MMP_RS04070at 771.565 kb on + strand, within MMP_RS04070at 771.566 kb on - strand, within MMP_RS04070at 771.580 kb on - strand, within MMP_RS04070at 771.580 kb on - strand, within MMP_RS04070at 771.580 kb on - strand, within MMP_RS04070at 771.725 kb on - strand, within MMP_RS04070at 771.725 kb on - strand, within MMP_RS04070

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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767,742 - MMP_RS04050 0.71 +0.1
767,787 - -0.5
767,924 + MMP_RS04055 0.31 +0.3
768,292 + MMP_RS04060 0.24 +0.0
768,317 - MMP_RS04060 0.28 +0.2
768,425 - MMP_RS04060 0.49 -0.8
768,426 + MMP_RS04060 0.50 +0.3
768,491 - MMP_RS04060 0.62 +0.3
768,575 - MMP_RS04060 0.78 +0.8
768,576 + MMP_RS04060 0.79 +0.4
768,668 + -0.2
768,775 - -0.2
768,951 + MMP_RS04065 0.12 +0.2
768,992 - MMP_RS04065 0.14 -0.3
768,993 + MMP_RS04065 0.14 +0.1
769,010 - MMP_RS04065 0.15 +0.7
769,064 - MMP_RS04065 0.17 +0.1
769,103 + MMP_RS04065 0.19 +0.1
769,160 - MMP_RS04065 0.22 +0.1
769,175 + MMP_RS04065 0.23 -0.1
769,219 + MMP_RS04065 0.25 -0.6
769,289 - MMP_RS04065 0.28 -0.2
769,630 - MMP_RS04065 0.45 -0.1
769,754 - MMP_RS04065 0.51 +0.2
769,754 - MMP_RS04065 0.51 +0.0
769,754 - MMP_RS04065 0.51 +0.3
769,758 + MMP_RS04065 0.51 -0.1
769,758 + MMP_RS04065 0.51 +0.1
769,811 + MMP_RS04065 0.54 +0.2
769,811 + MMP_RS04065 0.54 -0.2
769,811 + MMP_RS04065 0.54 -0.7
769,816 + MMP_RS04065 0.54 +0.7
769,816 + MMP_RS04065 0.54 -0.1
769,816 + MMP_RS04065 0.54 -0.0
769,816 + MMP_RS04065 0.54 -0.8
769,829 - MMP_RS04065 0.55 +0.2
769,830 + MMP_RS04065 0.55 +0.6
769,996 - MMP_RS04065 0.63 +0.1
769,996 - MMP_RS04065 0.63 +0.1
770,104 - MMP_RS04065 0.68 -0.2
770,104 - MMP_RS04065 0.68 -0.2
770,105 + MMP_RS04065 0.68 +0.2
770,252 - MMP_RS04065 0.76 +0.1
770,343 - MMP_RS04065 0.80 +0.7
770,415 + MMP_RS04065 0.84 -0.5
770,415 + MMP_RS04065 0.84 +0.5
770,420 - MMP_RS04065 0.84 -0.5
770,432 + MMP_RS04065 0.85 +0.1
770,517 + MMP_RS04065 0.89 -1.5
770,588 + +0.4
770,654 + +0.2
770,852 - +0.4
770,852 - -0.1
770,859 - -0.2
770,866 + +0.1
770,932 - +0.1
770,933 + +0.2
770,941 + MMP_RS04070 0.10 +0.3
771,059 - MMP_RS04070 0.16 -0.3
771,059 - MMP_RS04070 0.16 -1.5
771,065 + MMP_RS04070 0.17 +0.4
771,148 + MMP_RS04070 0.21 -0.4
771,181 - MMP_RS04070 0.23 -0.3
771,189 + MMP_RS04070 0.23 +0.3
771,223 - MMP_RS04070 0.25 -0.8
771,224 + MMP_RS04070 0.25 +0.1
771,260 + MMP_RS04070 0.27 -1.0
771,319 - MMP_RS04070 0.30 -0.2
771,356 - MMP_RS04070 0.32 -1.2
771,356 - MMP_RS04070 0.32 +0.3
771,356 - MMP_RS04070 0.32 -0.2
771,356 - MMP_RS04070 0.32 -0.0
771,363 - MMP_RS04070 0.32 +0.6
771,378 - MMP_RS04070 0.33 -0.3
771,430 + MMP_RS04070 0.35 -0.1
771,430 + MMP_RS04070 0.35 -0.3
771,430 + MMP_RS04070 0.35 -0.1
771,430 + MMP_RS04070 0.35 +0.5
771,430 + MMP_RS04070 0.35 +0.7
771,434 - MMP_RS04070 0.36 -0.3
771,435 + MMP_RS04070 0.36 -0.4
771,435 + MMP_RS04070 0.36 -0.1
771,500 - MMP_RS04070 0.39 -0.2
771,557 - MMP_RS04070 0.42 -0.2
771,564 - MMP_RS04070 0.42 +0.3
771,565 + MMP_RS04070 0.42 +0.4
771,566 - MMP_RS04070 0.42 -0.2
771,580 - MMP_RS04070 0.43 +0.5
771,580 - MMP_RS04070 0.43 -0.2
771,580 - MMP_RS04070 0.43 -0.9
771,725 - MMP_RS04070 0.51 -0.1
771,725 - MMP_RS04070 0.51 -0.3

Or see this region's nucleotide sequence