Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03260 and MMP_RS03265 are separated by 19 nucleotides MMP_RS03265 and MMP_RS03270 are separated by 46 nucleotides MMP_RS03270 and MMP_RS03275 are separated by 64 nucleotides MMP_RS03275 and MMP_RS03280 are separated by 63 nucleotides
MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816
_RS03260
MMP_RS03265: MMP_RS03265 - sugar phosphate isomerase/epimerase, at 615,836 to 616,645
_RS03265
MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600
_RS03270
MMP_RS03275: MMP_RS03275 - TIGR00266 family protein, at 617,665 to 618,333
_RS03275
MMP_RS03280: MMP_RS03280 - pyridoxamine 5'-phosphate oxidase family protein, at 618,397 to 618,798
_RS03280
Position (kb) 616
617
618 Strain fitness (log2 ratio) -1
0
1 at 615.871 kb on - strand at 615.875 kb on - strand at 615.876 kb on + strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.884 kb on - strand at 615.913 kb on - strand at 615.915 kb on - strand at 615.915 kb on - strand at 615.916 kb on + strand at 615.916 kb on + strand at 615.916 kb on + strand at 615.917 kb on - strand, within MMP_RS03265 at 615.930 kb on + strand, within MMP_RS03265 at 615.958 kb on - strand, within MMP_RS03265 at 615.981 kb on + strand, within MMP_RS03265 at 616.193 kb on - strand, within MMP_RS03265 at 616.279 kb on - strand, within MMP_RS03265 at 616.280 kb on + strand, within MMP_RS03265 at 616.409 kb on + strand, within MMP_RS03265 at 616.409 kb on + strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.456 kb on - strand, within MMP_RS03265 at 616.457 kb on + strand, within MMP_RS03265 at 616.460 kb on - strand, within MMP_RS03265 at 616.460 kb on - strand, within MMP_RS03265 at 616.461 kb on + strand, within MMP_RS03265 at 616.466 kb on - strand, within MMP_RS03265 at 616.466 kb on - strand, within MMP_RS03265 at 616.496 kb on - strand, within MMP_RS03265 at 616.496 kb on - strand, within MMP_RS03265 at 616.497 kb on + strand, within MMP_RS03265 at 616.506 kb on + strand, within MMP_RS03265 at 616.581 kb on + strand at 616.581 kb on + strand at 616.582 kb on - strand at 616.582 kb on - strand at 616.583 kb on + strand at 616.587 kb on + strand at 616.606 kb on + strand at 616.656 kb on - strand at 616.656 kb on - strand at 616.672 kb on - strand at 616.962 kb on - strand, within MMP_RS03270 at 616.970 kb on - strand, within MMP_RS03270 at 616.970 kb on - strand, within MMP_RS03270 at 617.033 kb on - strand, within MMP_RS03270 at 617.127 kb on + strand, within MMP_RS03270 at 617.434 kb on - strand, within MMP_RS03270 at 617.472 kb on - strand, within MMP_RS03270 at 617.650 kb on + strand at 617.783 kb on - strand, within MMP_RS03275 at 617.784 kb on + strand, within MMP_RS03275 at 617.853 kb on + strand, within MMP_RS03275 at 617.913 kb on - strand, within MMP_RS03275 at 617.915 kb on - strand, within MMP_RS03275 at 618.232 kb on - strand, within MMP_RS03275 at 618.233 kb on + strand, within MMP_RS03275 at 618.308 kb on + strand at 618.395 kb on + strand at 618.395 kb on + strand at 618.443 kb on - strand, within MMP_RS03280 at 618.482 kb on - strand, within MMP_RS03280 at 618.524 kb on - strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280 at 618.579 kb on + strand, within MMP_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 615,871 - +0.5 615,875 - +0.1 615,876 + -0.0 615,880 - -0.5 615,880 - -0.6 615,880 - +0.8 615,884 - -0.1 615,913 - -0.1 615,915 - -0.0 615,915 - +0.2 615,916 + +0.1 615,916 + -0.4 615,916 + -0.1 615,917 - MMP_RS03265 0.10 +0.5 615,930 + MMP_RS03265 0.12 -0.1 615,958 - MMP_RS03265 0.15 -0.4 615,981 + MMP_RS03265 0.18 +0.0 616,193 - MMP_RS03265 0.44 +0.8 616,279 - MMP_RS03265 0.55 +0.3 616,280 + MMP_RS03265 0.55 +0.1 616,409 + MMP_RS03265 0.71 -0.2 616,409 + MMP_RS03265 0.71 -0.6 616,454 - MMP_RS03265 0.76 +0.2 616,454 - MMP_RS03265 0.76 -0.3 616,454 - MMP_RS03265 0.76 -0.4 616,455 + MMP_RS03265 0.76 +0.7 616,455 + MMP_RS03265 0.76 +0.5 616,455 + MMP_RS03265 0.76 +0.3 616,456 - MMP_RS03265 0.77 +0.2 616,457 + MMP_RS03265 0.77 +0.5 616,460 - MMP_RS03265 0.77 -0.3 616,460 - MMP_RS03265 0.77 -0.1 616,461 + MMP_RS03265 0.77 -0.3 616,466 - MMP_RS03265 0.78 +0.1 616,466 - MMP_RS03265 0.78 +0.4 616,496 - MMP_RS03265 0.81 +0.2 616,496 - MMP_RS03265 0.81 -0.0 616,497 + MMP_RS03265 0.82 +0.3 616,506 + MMP_RS03265 0.83 -0.1 616,581 + +0.5 616,581 + +0.7 616,582 - +0.1 616,582 - -0.3 616,583 + -0.4 616,587 + -0.1 616,606 + +0.0 616,656 - -0.1 616,656 - -0.5 616,672 - -0.1 616,962 - MMP_RS03270 0.30 +0.7 616,970 - MMP_RS03270 0.31 +0.3 616,970 - MMP_RS03270 0.31 -0.1 617,033 - MMP_RS03270 0.38 -0.4 617,127 + MMP_RS03270 0.48 -0.4 617,434 - MMP_RS03270 0.82 -0.4 617,472 - MMP_RS03270 0.86 -0.6 617,650 + +0.0 617,783 - MMP_RS03275 0.18 -0.3 617,784 + MMP_RS03275 0.18 -0.5 617,853 + MMP_RS03275 0.28 -0.1 617,913 - MMP_RS03275 0.37 +0.1 617,915 - MMP_RS03275 0.37 -0.2 618,232 - MMP_RS03275 0.85 +0.2 618,233 + MMP_RS03275 0.85 +0.1 618,308 + +0.5 618,395 + -0.6 618,395 + -0.1 618,443 - MMP_RS03280 0.11 -0.1 618,482 - MMP_RS03280 0.21 -0.3 618,524 - MMP_RS03280 0.32 +0.3 618,579 + MMP_RS03280 0.45 +0.4 618,579 + MMP_RS03280 0.45 -0.3
Or see this region's nucleotide sequence