Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03245 and MMP_RS03250 are separated by 105 nucleotides MMP_RS03250 and MMP_RS03255 are separated by 10 nucleotides MMP_RS03255 and MMP_RS03260 are separated by 22 nucleotides MMP_RS03260 and MMP_RS03265 are separated by 19 nucleotides MMP_RS03265 and MMP_RS03270 are separated by 46 nucleotides
MMP_RS03245: MMP_RS03245 - DNA repair and recombination protein RadB, at 612,707 to 613,357
_RS03245
MMP_RS03250: MMP_RS03250 - MJ1244 family protein, at 613,463 to 613,792
_RS03250
MMP_RS03255: MMP_RS03255 - DUF134 domain-containing protein, at 613,803 to 614,198
_RS03255
MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816
_RS03260
MMP_RS03265: MMP_RS03265 - sugar phosphate isomerase/epimerase, at 615,836 to 616,645
_RS03265
MMP_RS03270: MMP_RS03270 - ADP-ribosylglycohydrolase family protein, at 616,692 to 617,600
_RS03270
Position (kb) 614
615
616 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 613.250 kb on + strand, within MMP_RS03245 at 613.253 kb on + strand, within MMP_RS03245 at 613.376 kb on - strand at 613.405 kb on - strand at 613.409 kb on - strand at 613.410 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.702 kb on + strand, within MMP_RS03250 at 613.740 kb on + strand, within MMP_RS03250 at 613.741 kb on - strand, within MMP_RS03250 at 613.742 kb on + strand, within MMP_RS03250 at 614.274 kb on + strand at 614.286 kb on + strand at 614.533 kb on + strand at 614.537 kb on + strand at 614.537 kb on + strand at 614.896 kb on + strand at 615.296 kb on - strand at 615.669 kb on - strand at 615.672 kb on + strand at 615.672 kb on + strand at 615.871 kb on - strand at 615.875 kb on - strand at 615.876 kb on + strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.880 kb on - strand at 615.884 kb on - strand at 615.913 kb on - strand at 615.915 kb on - strand at 615.915 kb on - strand at 615.916 kb on + strand at 615.916 kb on + strand at 615.916 kb on + strand at 615.917 kb on - strand, within MMP_RS03265 at 615.930 kb on + strand, within MMP_RS03265 at 615.958 kb on - strand, within MMP_RS03265 at 615.981 kb on + strand, within MMP_RS03265 at 616.193 kb on - strand, within MMP_RS03265 at 616.279 kb on - strand, within MMP_RS03265 at 616.280 kb on + strand, within MMP_RS03265 at 616.409 kb on + strand, within MMP_RS03265 at 616.409 kb on + strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.454 kb on - strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.455 kb on + strand, within MMP_RS03265 at 616.456 kb on - strand, within MMP_RS03265 at 616.457 kb on + strand, within MMP_RS03265 at 616.460 kb on - strand, within MMP_RS03265 at 616.460 kb on - strand, within MMP_RS03265 at 616.461 kb on + strand, within MMP_RS03265 at 616.466 kb on - strand, within MMP_RS03265 at 616.466 kb on - strand, within MMP_RS03265 at 616.496 kb on - strand, within MMP_RS03265 at 616.496 kb on - strand, within MMP_RS03265 at 616.497 kb on + strand, within MMP_RS03265 at 616.506 kb on + strand, within MMP_RS03265 at 616.581 kb on + strand at 616.581 kb on + strand at 616.582 kb on - strand at 616.582 kb on - strand at 616.583 kb on + strand at 616.587 kb on + strand at 616.606 kb on + strand at 616.656 kb on - strand at 616.656 kb on - strand at 616.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 613,250 + MMP_RS03245 0.83 -0.1 613,253 + MMP_RS03245 0.84 +0.2 613,376 - -0.1 613,405 - -1.8 613,409 - -4.0 613,410 + -4.5 613,428 + -4.8 613,428 + -4.6 613,702 + MMP_RS03250 0.72 -5.6 613,740 + MMP_RS03250 0.84 -5.1 613,741 - MMP_RS03250 0.84 -4.7 613,742 + MMP_RS03250 0.85 -5.0 614,274 + -2.4 614,286 + -4.3 614,533 + -1.7 614,537 + -2.4 614,537 + -1.7 614,896 + -3.6 615,296 - -3.1 615,669 - -2.2 615,672 + -2.0 615,672 + -1.7 615,871 - +0.5 615,875 - +0.1 615,876 + -0.0 615,880 - -0.5 615,880 - -0.6 615,880 - +0.8 615,884 - -0.1 615,913 - -0.1 615,915 - -0.0 615,915 - +0.2 615,916 + +0.1 615,916 + -0.4 615,916 + -0.1 615,917 - MMP_RS03265 0.10 +0.5 615,930 + MMP_RS03265 0.12 -0.1 615,958 - MMP_RS03265 0.15 -0.4 615,981 + MMP_RS03265 0.18 +0.0 616,193 - MMP_RS03265 0.44 +0.8 616,279 - MMP_RS03265 0.55 +0.3 616,280 + MMP_RS03265 0.55 +0.1 616,409 + MMP_RS03265 0.71 -0.2 616,409 + MMP_RS03265 0.71 -0.6 616,454 - MMP_RS03265 0.76 +0.2 616,454 - MMP_RS03265 0.76 -0.3 616,454 - MMP_RS03265 0.76 -0.4 616,455 + MMP_RS03265 0.76 +0.7 616,455 + MMP_RS03265 0.76 +0.5 616,455 + MMP_RS03265 0.76 +0.3 616,456 - MMP_RS03265 0.77 +0.2 616,457 + MMP_RS03265 0.77 +0.5 616,460 - MMP_RS03265 0.77 -0.3 616,460 - MMP_RS03265 0.77 -0.1 616,461 + MMP_RS03265 0.77 -0.3 616,466 - MMP_RS03265 0.78 +0.1 616,466 - MMP_RS03265 0.78 +0.4 616,496 - MMP_RS03265 0.81 +0.2 616,496 - MMP_RS03265 0.81 -0.0 616,497 + MMP_RS03265 0.82 +0.3 616,506 + MMP_RS03265 0.83 -0.1 616,581 + +0.5 616,581 + +0.7 616,582 - +0.1 616,582 - -0.3 616,583 + -0.4 616,587 + -0.1 616,606 + +0.0 616,656 - -0.1 616,656 - -0.5 616,672 - -0.1
Or see this region's nucleotide sequence