Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03235 and MMP_RS03240 are separated by 130 nucleotides MMP_RS03240 and MMP_RS03245 are separated by 46 nucleotides MMP_RS03245 and MMP_RS03250 are separated by 105 nucleotides
MMP_RS03235: MMP_RS03235 - tRNA pseudouridine(13) synthase TruD, at 609,963 to 611,255
_RS03235
MMP_RS03240: MMP_RS03240 - tRNA(Ile)(2)-agmatinylcytidine synthase, at 611,386 to 612,660
_RS03240
MMP_RS03245: MMP_RS03245 - DNA repair and recombination protein RadB, at 612,707 to 613,357
_RS03245
MMP_RS03250: MMP_RS03250 - MJ1244 family protein, at 613,463 to 613,792
_RS03250
Position (kb) 611
612
613 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 610.388 kb on - strand, within MMP_RS03235 at 610.532 kb on + strand, within MMP_RS03235 at 610.690 kb on + strand, within MMP_RS03235 at 610.690 kb on + strand, within MMP_RS03235 at 610.787 kb on - strand, within MMP_RS03235 at 611.205 kb on - strand at 611.279 kb on - strand at 611.285 kb on - strand at 611.286 kb on + strand at 611.307 kb on - strand at 611.307 kb on - strand at 611.316 kb on + strand at 611.386 kb on + strand at 611.437 kb on - strand at 611.615 kb on - strand at 611.623 kb on + strand at 611.623 kb on + strand at 611.962 kb on + strand at 612.120 kb on + strand at 612.416 kb on - strand at 612.434 kb on + strand at 612.681 kb on + strand at 612.706 kb on - strand at 612.734 kb on + strand at 612.790 kb on - strand, within MMP_RS03245 at 613.003 kb on - strand, within MMP_RS03245 at 613.066 kb on - strand, within MMP_RS03245 at 613.250 kb on + strand, within MMP_RS03245 at 613.253 kb on + strand, within MMP_RS03245 at 613.376 kb on - strand at 613.405 kb on - strand at 613.409 kb on - strand at 613.410 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 610,388 - MMP_RS03235 0.33 -0.5 610,532 + MMP_RS03235 0.44 +0.1 610,690 + MMP_RS03235 0.56 -1.1 610,690 + MMP_RS03235 0.56 +0.7 610,787 - MMP_RS03235 0.64 +0.9 611,205 - +0.8 611,279 - -1.0 611,285 - -0.0 611,286 + +0.3 611,307 - -0.8 611,307 - +0.5 611,316 + +0.4 611,386 + -0.0 611,437 - -1.2 611,615 - -1.3 611,623 + -1.2 611,623 + -3.0 611,962 + -2.2 612,120 + -0.9 612,416 - -0.8 612,434 + -2.5 612,681 + -0.0 612,706 - +1.2 612,734 + +0.1 612,790 - MMP_RS03245 0.13 -0.2 613,003 - MMP_RS03245 0.45 +0.9 613,066 - MMP_RS03245 0.55 -0.8 613,250 + MMP_RS03245 0.83 -0.1 613,253 + MMP_RS03245 0.84 +0.2 613,376 - -0.1 613,405 - -1.8 613,409 - -4.0 613,410 + -4.5 613,428 + -4.8 613,428 + -4.6
Or see this region's nucleotide sequence