Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02655

Experiment: Formate with hypochlorite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS02645 and MMP_RS08945 are separated by 112 nucleotidesMMP_RS08945 and MMP_RS02650 are separated by 38 nucleotidesMMP_RS02650 and MMP_RS02655 are separated by 145 nucleotidesMMP_RS02655 and MMP_RS02660 are separated by 460 nucleotides MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530 _RS02645 MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786 _RS08945 MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376 _RS02650 MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024 _RS02655 MMP_RS02660: MMP_RS02660 - hypothetical protein, at 506,485 to 507,573 _RS02660 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 503.535 kb on + strandat 503.546 kb on + strandat 503.553 kb on - strandat 503.556 kb on + strandat 503.562 kb on - strandat 503.563 kb on + strandat 503.612 kb on - strandat 503.613 kb on + strandat 503.633 kb on + strandat 503.640 kb on + strandat 503.642 kb on - strandat 503.643 kb on + strandat 503.673 kb on + strand, within MMP_RS08945at 503.673 kb on + strand, within MMP_RS08945at 503.714 kb on + strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.720 kb on - strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.721 kb on + strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.732 kb on - strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.733 kb on + strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.734 kb on - strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.735 kb on + strand, within MMP_RS08945at 503.759 kb on - strand, within MMP_RS08945at 503.778 kb on + strandat 503.785 kb on + strandat 503.785 kb on + strandat 503.812 kb on + strandat 503.812 kb on + strandat 503.833 kb on - strandat 503.928 kb on - strand, within MMP_RS02650at 503.929 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.954 kb on + strand, within MMP_RS02650at 503.983 kb on - strand, within MMP_RS02650at 504.017 kb on + strand, within MMP_RS02650at 504.125 kb on - strand, within MMP_RS02650at 504.132 kb on - strand, within MMP_RS02650at 504.186 kb on + strand, within MMP_RS02650at 504.224 kb on - strand, within MMP_RS02650at 504.225 kb on + strand, within MMP_RS02650at 504.264 kb on - strand, within MMP_RS02650at 504.424 kb on - strandat 504.425 kb on + strandat 504.427 kb on + strandat 504.457 kb on + strandat 504.506 kb on - strandat 504.528 kb on + strandat 504.568 kb on - strandat 504.568 kb on - strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.569 kb on + strandat 504.572 kb on - strandat 504.725 kb on + strand, within MMP_RS02655at 504.746 kb on + strand, within MMP_RS02655at 504.795 kb on - strand, within MMP_RS02655at 504.801 kb on - strand, within MMP_RS02655at 504.818 kb on - strand, within MMP_RS02655at 504.836 kb on + strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.837 kb on - strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.838 kb on + strand, within MMP_RS02655at 504.870 kb on + strand, within MMP_RS02655at 504.891 kb on - strand, within MMP_RS02655at 504.892 kb on + strand, within MMP_RS02655at 504.954 kb on - strand, within MMP_RS02655at 504.955 kb on + strand, within MMP_RS02655at 504.960 kb on + strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.018 kb on - strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.019 kb on + strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.020 kb on - strand, within MMP_RS02655at 505.021 kb on + strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.064 kb on - strand, within MMP_RS02655at 505.068 kb on - strand, within MMP_RS02655at 505.094 kb on + strand, within MMP_RS02655at 505.101 kb on - strand, within MMP_RS02655at 505.130 kb on + strand, within MMP_RS02655at 505.154 kb on + strand, within MMP_RS02655at 505.206 kb on - strand, within MMP_RS02655at 505.231 kb on - strand, within MMP_RS02655at 505.263 kb on + strand, within MMP_RS02655at 505.311 kb on + strand, within MMP_RS02655at 505.341 kb on + strand, within MMP_RS02655at 505.485 kb on - strand, within MMP_RS02655at 505.534 kb on + strand, within MMP_RS02655at 505.627 kb on - strand, within MMP_RS02655at 506.107 kb on - strandat 506.156 kb on - strandat 506.209 kb on - strandat 506.253 kb on - strandat 506.261 kb on + strandat 506.411 kb on + strandat 506.447 kb on - strandat 506.668 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.670 kb on - strand, within MMP_RS02660at 506.674 kb on - strand, within MMP_RS02660at 506.755 kb on + strand, within MMP_RS02660at 506.762 kb on + strand, within MMP_RS02660at 506.764 kb on + strand, within MMP_RS02660at 506.766 kb on - strand, within MMP_RS02660at 506.767 kb on + strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.770 kb on - strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.771 kb on + strand, within MMP_RS02660at 506.776 kb on + strand, within MMP_RS02660at 506.813 kb on - strand, within MMP_RS02660at 506.857 kb on + strand, within MMP_RS02660at 506.938 kb on + strand, within MMP_RS02660at 507.000 kb on - strand, within MMP_RS02660at 507.001 kb on + strand, within MMP_RS02660at 507.015 kb on - strand, within MMP_RS02660at 507.016 kb on + strand, within MMP_RS02660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
remove
503,535 + -1.0
503,546 + -2.6
503,553 - -3.5
503,556 + -3.3
503,562 - -3.1
503,563 + -2.8
503,612 - -3.1
503,613 + -2.4
503,633 + -3.5
503,640 + -2.6
503,642 - -3.6
503,643 + -2.9
503,673 + MMP_RS08945 0.21 -2.6
503,673 + MMP_RS08945 0.21 -3.0
503,714 + MMP_RS08945 0.49 -2.5
503,720 - MMP_RS08945 0.53 -3.2
503,720 - MMP_RS08945 0.53 -3.7
503,721 + MMP_RS08945 0.54 -3.0
503,721 + MMP_RS08945 0.54 -3.8
503,732 - MMP_RS08945 0.62 -3.6
503,732 - MMP_RS08945 0.62 -3.2
503,732 - MMP_RS08945 0.62 -3.8
503,733 + MMP_RS08945 0.62 -3.6
503,733 + MMP_RS08945 0.62 -2.9
503,733 + MMP_RS08945 0.62 -1.9
503,734 - MMP_RS08945 0.63 -3.7
503,734 - MMP_RS08945 0.63 -2.9
503,735 + MMP_RS08945 0.64 -4.1
503,735 + MMP_RS08945 0.64 -3.0
503,735 + MMP_RS08945 0.64 -2.4
503,759 - MMP_RS08945 0.81 -4.0
503,778 + -3.7
503,785 + -3.0
503,785 + -2.3
503,812 + -2.7
503,812 + -2.8
503,833 - -2.3
503,928 - MMP_RS02650 0.19 -2.7
503,929 + MMP_RS02650 0.19 -1.9
503,954 + MMP_RS02650 0.23 -3.2
503,954 + MMP_RS02650 0.23 -3.4
503,983 - MMP_RS02650 0.29 -2.8
504,017 + MMP_RS02650 0.35 -3.9
504,125 - MMP_RS02650 0.54 -2.1
504,132 - MMP_RS02650 0.56 -2.6
504,186 + MMP_RS02650 0.65 -4.0
504,224 - MMP_RS02650 0.72 -2.2
504,225 + MMP_RS02650 0.72 -2.6
504,264 - MMP_RS02650 0.80 -1.6
504,424 - -0.3
504,425 + -2.2
504,427 + -1.1
504,457 + +0.1
504,506 - +0.7
504,528 + -0.0
504,568 - +0.7
504,568 - +0.6
504,569 + +0.1
504,569 + -0.8
504,569 + +0.5
504,572 - +0.3
504,725 + MMP_RS02655 0.14 -0.4
504,746 + MMP_RS02655 0.15 -0.6
504,795 - MMP_RS02655 0.18 -0.7
504,801 - MMP_RS02655 0.19 +0.2
504,818 - MMP_RS02655 0.20 +0.6
504,836 + MMP_RS02655 0.21 -0.2
504,837 - MMP_RS02655 0.21 +0.0
504,837 - MMP_RS02655 0.21 +0.4
504,838 + MMP_RS02655 0.21 -0.7
504,838 + MMP_RS02655 0.21 +0.1
504,838 + MMP_RS02655 0.21 -0.3
504,870 + MMP_RS02655 0.23 -0.3
504,891 - MMP_RS02655 0.25 +0.3
504,892 + MMP_RS02655 0.25 +0.1
504,954 - MMP_RS02655 0.29 -0.1
504,955 + MMP_RS02655 0.29 -0.2
504,960 + MMP_RS02655 0.29 -0.2
505,018 - MMP_RS02655 0.33 +0.1
505,018 - MMP_RS02655 0.33 -0.2
505,019 + MMP_RS02655 0.33 +0.1
505,019 + MMP_RS02655 0.33 -0.5
505,019 + MMP_RS02655 0.33 +0.0
505,020 - MMP_RS02655 0.33 +0.1
505,020 - MMP_RS02655 0.33 +0.8
505,021 + MMP_RS02655 0.33 +0.5
505,064 - MMP_RS02655 0.36 +0.1
505,064 - MMP_RS02655 0.36 +0.1
505,068 - MMP_RS02655 0.36 +0.5
505,094 + MMP_RS02655 0.38 -1.0
505,101 - MMP_RS02655 0.39 +0.1
505,130 + MMP_RS02655 0.40 -0.1
505,154 + MMP_RS02655 0.42 +0.4
505,206 - MMP_RS02655 0.46 +1.1
505,231 - MMP_RS02655 0.47 -0.0
505,263 + MMP_RS02655 0.49 +0.4
505,311 + MMP_RS02655 0.52 -0.2
505,341 + MMP_RS02655 0.54 -1.1
505,485 - MMP_RS02655 0.64 -0.9
505,534 + MMP_RS02655 0.67 +0.2
505,627 - MMP_RS02655 0.74 +0.5
506,107 - +0.0
506,156 - +0.4
506,209 - -0.3
506,253 - +0.6
506,261 + +0.3
506,411 + -0.3
506,447 - +0.3
506,668 - MMP_RS02660 0.17 +0.3
506,670 - MMP_RS02660 0.17 -1.1
506,670 - MMP_RS02660 0.17 +0.2
506,674 - MMP_RS02660 0.17 +0.2
506,755 + MMP_RS02660 0.25 -0.5
506,762 + MMP_RS02660 0.25 +0.5
506,764 + MMP_RS02660 0.26 -0.2
506,766 - MMP_RS02660 0.26 +0.7
506,767 + MMP_RS02660 0.26 +0.0
506,770 - MMP_RS02660 0.26 -0.4
506,770 - MMP_RS02660 0.26 +0.1
506,771 + MMP_RS02660 0.26 -0.2
506,771 + MMP_RS02660 0.26 -0.6
506,776 + MMP_RS02660 0.27 -0.4
506,813 - MMP_RS02660 0.30 +0.2
506,857 + MMP_RS02660 0.34 -0.1
506,938 + MMP_RS02660 0.42 -0.5
507,000 - MMP_RS02660 0.47 -0.0
507,001 + MMP_RS02660 0.47 -0.0
507,015 - MMP_RS02660 0.49 -0.1
507,016 + MMP_RS02660 0.49 +0.1

Or see this region's nucleotide sequence