Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02400

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02385 and MMP_RS02390 are separated by 9 nucleotidesMMP_RS02390 and MMP_RS02395 are separated by 178 nucleotidesMMP_RS02395 and MMP_RS02400 are separated by 41 nucleotidesMMP_RS02400 and MMP_RS02405 are separated by 127 nucleotidesMMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02385: MMP_RS02385 - ATP-binding protein, at 444,206 to 445,063 _RS02385 MMP_RS02390: MMP_RS02390 - NifB/NifX family molybdenum-iron cluster-binding protein, at 445,073 to 445,432 _RS02390 MMP_RS02395: MMP_RS02395 - hypothetical protein, at 445,611 to 445,883 _RS02395 MMP_RS02400: MMP_RS02400 - site-2 protease family protein, at 445,925 to 446,938 _RS02400 MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587 _RS02405 MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449 _RS02410 Position (kb) 445 446 447Strain fitness (log2 ratio) -1 0 1at 444.964 kb on + strand, within MMP_RS02385at 444.964 kb on + strand, within MMP_RS02385at 445.010 kb on + strandat 445.014 kb on + strandat 445.050 kb on + strandat 445.057 kb on - strandat 445.078 kb on - strandat 445.223 kb on + strand, within MMP_RS02390at 445.236 kb on + strand, within MMP_RS02390at 445.309 kb on - strand, within MMP_RS02390at 445.353 kb on + strand, within MMP_RS02390at 445.355 kb on + strand, within MMP_RS02390at 445.561 kb on + strandat 445.568 kb on - strandat 445.570 kb on - strandat 445.623 kb on - strandat 445.638 kb on - strandat 445.691 kb on - strand, within MMP_RS02395at 445.692 kb on + strand, within MMP_RS02395at 445.692 kb on + strand, within MMP_RS02395at 445.719 kb on + strand, within MMP_RS02395at 445.722 kb on - strand, within MMP_RS02395at 445.734 kb on - strand, within MMP_RS02395at 445.764 kb on - strand, within MMP_RS02395at 445.772 kb on - strand, within MMP_RS02395at 445.773 kb on + strand, within MMP_RS02395at 445.773 kb on + strand, within MMP_RS02395at 445.802 kb on + strand, within MMP_RS02395at 445.809 kb on - strand, within MMP_RS02395at 445.815 kb on - strand, within MMP_RS02395at 445.816 kb on + strand, within MMP_RS02395at 445.839 kb on + strand, within MMP_RS02395at 445.947 kb on + strandat 445.951 kb on - strandat 445.979 kb on + strandat 445.985 kb on - strandat 446.030 kb on + strand, within MMP_RS02400at 446.096 kb on - strand, within MMP_RS02400at 446.106 kb on + strand, within MMP_RS02400at 446.111 kb on + strand, within MMP_RS02400at 446.129 kb on + strand, within MMP_RS02400at 446.129 kb on + strand, within MMP_RS02400at 446.149 kb on - strand, within MMP_RS02400at 446.259 kb on + strand, within MMP_RS02400at 446.272 kb on - strand, within MMP_RS02400at 446.273 kb on + strand, within MMP_RS02400at 446.273 kb on + strand, within MMP_RS02400at 446.276 kb on + strand, within MMP_RS02400at 446.301 kb on + strand, within MMP_RS02400at 446.305 kb on - strand, within MMP_RS02400at 446.305 kb on - strand, within MMP_RS02400at 446.306 kb on + strand, within MMP_RS02400at 446.306 kb on + strand, within MMP_RS02400at 446.351 kb on + strand, within MMP_RS02400at 446.387 kb on - strand, within MMP_RS02400at 446.403 kb on + strand, within MMP_RS02400at 446.411 kb on - strand, within MMP_RS02400at 446.458 kb on - strand, within MMP_RS02400at 446.459 kb on + strand, within MMP_RS02400at 446.460 kb on - strand, within MMP_RS02400at 446.494 kb on - strand, within MMP_RS02400at 446.494 kb on - strand, within MMP_RS02400at 446.553 kb on + strand, within MMP_RS02400at 446.775 kb on - strand, within MMP_RS02400at 446.776 kb on + strand, within MMP_RS02400at 446.824 kb on + strand, within MMP_RS02400at 446.877 kb on + strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.962 kb on - strandat 446.963 kb on + strandat 446.963 kb on + strandat 446.963 kb on + strandat 446.965 kb on - strandat 446.965 kb on - strandat 446.965 kb on - strandat 446.966 kb on + strandat 446.966 kb on + strandat 446.968 kb on + strandat 446.968 kb on + strandat 446.988 kb on + strandat 447.006 kb on - strandat 447.007 kb on + strandat 447.007 kb on + strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.010 kb on - strandat 447.020 kb on + strandat 447.050 kb on - strandat 447.051 kb on + strandat 447.085 kb on - strandat 447.085 kb on - strandat 447.085 kb on - strandat 447.366 kb on - strand, within MMP_RS02405at 447.366 kb on - strand, within MMP_RS02405at 447.367 kb on + strand, within MMP_RS02405at 447.367 kb on + strand, within MMP_RS02405at 447.369 kb on + strand, within MMP_RS02405at 447.415 kb on + strand, within MMP_RS02405at 447.472 kb on - strand, within MMP_RS02405at 447.601 kb on - strandat 447.601 kb on - strandat 447.642 kb on + strandat 447.738 kb on + strandat 447.837 kb on - strand, within MMP_RS02410

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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444,964 + MMP_RS02385 0.88 +0.6
444,964 + MMP_RS02385 0.88 +0.4
445,010 + +0.1
445,014 + -0.4
445,050 + +0.3
445,057 - -0.7
445,078 - -0.5
445,223 + MMP_RS02390 0.42 -0.4
445,236 + MMP_RS02390 0.45 +0.4
445,309 - MMP_RS02390 0.66 +0.5
445,353 + MMP_RS02390 0.78 +0.3
445,355 + MMP_RS02390 0.78 -0.0
445,561 + +0.1
445,568 - +0.0
445,570 - -0.2
445,623 - +0.4
445,638 - +0.3
445,691 - MMP_RS02395 0.29 +0.5
445,692 + MMP_RS02395 0.30 -0.3
445,692 + MMP_RS02395 0.30 +0.1
445,719 + MMP_RS02395 0.40 +0.1
445,722 - MMP_RS02395 0.41 -0.1
445,734 - MMP_RS02395 0.45 +0.4
445,764 - MMP_RS02395 0.56 +0.6
445,772 - MMP_RS02395 0.59 +0.0
445,773 + MMP_RS02395 0.59 -0.8
445,773 + MMP_RS02395 0.59 +0.2
445,802 + MMP_RS02395 0.70 -0.3
445,809 - MMP_RS02395 0.73 +0.0
445,815 - MMP_RS02395 0.75 +0.5
445,816 + MMP_RS02395 0.75 -0.2
445,839 + MMP_RS02395 0.84 -0.9
445,947 + +0.0
445,951 - +0.2
445,979 + +0.1
445,985 - -0.5
446,030 + MMP_RS02400 0.10 -0.6
446,096 - MMP_RS02400 0.17 -0.1
446,106 + MMP_RS02400 0.18 -0.1
446,111 + MMP_RS02400 0.18 +0.2
446,129 + MMP_RS02400 0.20 -0.4
446,129 + MMP_RS02400 0.20 -0.0
446,149 - MMP_RS02400 0.22 -0.1
446,259 + MMP_RS02400 0.33 +0.0
446,272 - MMP_RS02400 0.34 -0.0
446,273 + MMP_RS02400 0.34 +0.5
446,273 + MMP_RS02400 0.34 +0.7
446,276 + MMP_RS02400 0.35 -0.3
446,301 + MMP_RS02400 0.37 +0.3
446,305 - MMP_RS02400 0.37 -1.1
446,305 - MMP_RS02400 0.37 -0.2
446,306 + MMP_RS02400 0.38 +0.1
446,306 + MMP_RS02400 0.38 +0.1
446,351 + MMP_RS02400 0.42 +0.3
446,387 - MMP_RS02400 0.46 -0.1
446,403 + MMP_RS02400 0.47 -0.1
446,411 - MMP_RS02400 0.48 +0.1
446,458 - MMP_RS02400 0.53 +0.2
446,459 + MMP_RS02400 0.53 -0.2
446,460 - MMP_RS02400 0.53 -0.1
446,494 - MMP_RS02400 0.56 -0.2
446,494 - MMP_RS02400 0.56 -0.4
446,553 + MMP_RS02400 0.62 -0.4
446,775 - MMP_RS02400 0.84 +0.2
446,776 + MMP_RS02400 0.84 -0.3
446,824 + MMP_RS02400 0.89 -0.1
446,877 + -0.2
446,962 - -0.1
446,962 - +0.5
446,962 - -0.1
446,962 - +0.1
446,963 + -0.6
446,963 + +0.7
446,963 + +0.3
446,965 - +0.0
446,965 - -0.5
446,965 - -0.5
446,966 + +0.0
446,966 + +0.4
446,968 + +0.8
446,968 + +0.3
446,988 + -0.7
447,006 - -0.1
447,007 + +0.9
447,007 + +0.4
447,010 - -0.3
447,010 - +0.3
447,010 - +0.1
447,010 - -0.2
447,020 + +0.2
447,050 - -0.2
447,051 + -0.9
447,085 - +0.0
447,085 - -0.0
447,085 - +0.4
447,366 - MMP_RS02405 0.57 -0.9
447,366 - MMP_RS02405 0.57 +0.3
447,367 + MMP_RS02405 0.58 +0.0
447,367 + MMP_RS02405 0.58 +0.8
447,369 + MMP_RS02405 0.58 -0.5
447,415 + MMP_RS02405 0.67 +0.2
447,472 - MMP_RS02405 0.78 -0.5
447,601 - +0.8
447,601 - +0.1
447,642 + +0.2
447,738 + -0.2
447,837 - MMP_RS02410 0.18 -0.0

Or see this region's nucleotide sequence