Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02250

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02240 and MMP_RS02245 are separated by 30 nucleotidesMMP_RS02245 and MMP_RS02250 are separated by 132 nucleotidesMMP_RS02250 and MMP_RS02255 are separated by 126 nucleotidesMMP_RS02255 and MMP_RS02260 are separated by 406 nucleotides MMP_RS02240: MMP_RS02240 - methanogenesis marker 7 protein, at 423,270 to 424,184 _RS02240 MMP_RS02245: MMP_RS02245 - hypothetical protein, at 424,215 to 424,667 _RS02245 MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188 _RS02250 MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530 _RS02255 MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578 _RS02260 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 423.885 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 423.959 kb on + strand, within MMP_RS02240at 424.077 kb on - strand, within MMP_RS02240at 424.098 kb on - strandat 424.099 kb on + strandat 424.104 kb on + strandat 424.183 kb on + strandat 424.426 kb on - strand, within MMP_RS02245at 424.427 kb on + strand, within MMP_RS02245at 424.435 kb on + strand, within MMP_RS02245at 424.511 kb on - strand, within MMP_RS02245at 424.517 kb on + strand, within MMP_RS02245at 424.657 kb on - strandat 424.657 kb on - strandat 424.657 kb on - strandat 424.659 kb on - strandat 424.744 kb on - strandat 424.745 kb on + strandat 425.010 kb on + strand, within MMP_RS02250at 425.092 kb on - strand, within MMP_RS02250at 425.128 kb on - strand, within MMP_RS02250at 425.145 kb on + strand, within MMP_RS02250at 425.165 kb on - strand, within MMP_RS02250at 425.166 kb on + strand, within MMP_RS02250at 425.204 kb on - strand, within MMP_RS02250at 425.204 kb on - strand, within MMP_RS02250at 425.209 kb on + strand, within MMP_RS02250at 425.262 kb on + strand, within MMP_RS02250at 425.264 kb on + strand, within MMP_RS02250at 425.266 kb on - strand, within MMP_RS02250at 425.266 kb on - strand, within MMP_RS02250at 425.267 kb on + strand, within MMP_RS02250at 425.279 kb on + strand, within MMP_RS02250at 425.279 kb on + strand, within MMP_RS02250at 425.283 kb on + strand, within MMP_RS02250at 425.372 kb on + strand, within MMP_RS02250at 425.401 kb on + strand, within MMP_RS02250at 425.472 kb on + strand, within MMP_RS02250at 425.477 kb on + strand, within MMP_RS02250at 425.481 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.530 kb on - strand, within MMP_RS02250at 425.530 kb on - strand, within MMP_RS02250at 425.556 kb on + strand, within MMP_RS02250at 425.779 kb on - strand, within MMP_RS02250at 425.780 kb on + strand, within MMP_RS02250at 425.780 kb on + strand, within MMP_RS02250at 425.841 kb on + strand, within MMP_RS02250at 425.868 kb on - strand, within MMP_RS02250at 425.904 kb on + strand, within MMP_RS02250at 426.002 kb on - strand, within MMP_RS02250at 426.008 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.062 kb on - strandat 426.063 kb on + strandat 426.186 kb on - strandat 426.221 kb on + strandat 426.385 kb on - strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.456 kb on - strand, within MMP_RS02255at 426.461 kb on - strand, within MMP_RS02255at 426.486 kb on + strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.567 kb on - strandat 426.568 kb on + strandat 426.571 kb on - strandat 426.578 kb on + strandat 426.609 kb on + strandat 426.613 kb on - strandat 426.654 kb on + strandat 426.672 kb on + strandat 426.688 kb on - strandat 426.733 kb on + strandat 426.780 kb on - strandat 426.842 kb on - strandat 426.868 kb on - strandat 426.869 kb on + strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.875 kb on + strandat 426.875 kb on + strandat 426.883 kb on - strandat 426.884 kb on + strandat 427.051 kb on - strand, within MMP_RS02260at 427.051 kb on - strand, within MMP_RS02260at 427.052 kb on + strand, within MMP_RS02260at 427.053 kb on - strand, within MMP_RS02260at 427.063 kb on - strand, within MMP_RS02260at 427.064 kb on + strand, within MMP_RS02260at 427.123 kb on + strand, within MMP_RS02260

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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423,885 + MMP_RS02240 0.67 -2.1
423,959 + MMP_RS02240 0.75 -3.6
423,959 + MMP_RS02240 0.75 -3.0
424,077 - MMP_RS02240 0.88 -3.7
424,098 - -4.2
424,099 + -1.5
424,104 + -2.3
424,183 + -3.7
424,426 - MMP_RS02245 0.47 -2.8
424,427 + MMP_RS02245 0.47 -3.2
424,435 + MMP_RS02245 0.49 -4.6
424,511 - MMP_RS02245 0.65 -4.6
424,517 + MMP_RS02245 0.67 -4.5
424,657 - -0.8
424,657 - -3.0
424,657 - -3.8
424,659 - -3.0
424,744 - -0.8
424,745 + -0.5
425,010 + MMP_RS02250 0.15 -0.9
425,092 - MMP_RS02250 0.21 +0.4
425,128 - MMP_RS02250 0.24 -0.1
425,145 + MMP_RS02250 0.25 -0.0
425,165 - MMP_RS02250 0.26 +0.3
425,166 + MMP_RS02250 0.26 -0.3
425,204 - MMP_RS02250 0.29 -0.4
425,204 - MMP_RS02250 0.29 -0.2
425,209 + MMP_RS02250 0.29 +0.7
425,262 + MMP_RS02250 0.33 +0.1
425,264 + MMP_RS02250 0.33 -0.0
425,266 - MMP_RS02250 0.34 +0.0
425,266 - MMP_RS02250 0.34 -0.2
425,267 + MMP_RS02250 0.34 +0.0
425,279 + MMP_RS02250 0.34 -1.6
425,279 + MMP_RS02250 0.34 +0.4
425,283 + MMP_RS02250 0.35 -0.3
425,372 + MMP_RS02250 0.41 +0.3
425,401 + MMP_RS02250 0.43 -0.0
425,472 + MMP_RS02250 0.48 +0.4
425,477 + MMP_RS02250 0.49 +0.2
425,481 - MMP_RS02250 0.49 +0.4
425,525 - MMP_RS02250 0.52 +0.1
425,525 - MMP_RS02250 0.52 +0.3
425,525 - MMP_RS02250 0.52 +0.1
425,530 - MMP_RS02250 0.53 -0.2
425,530 - MMP_RS02250 0.53 -0.9
425,556 + MMP_RS02250 0.54 -0.0
425,779 - MMP_RS02250 0.70 +1.0
425,780 + MMP_RS02250 0.71 -0.1
425,780 + MMP_RS02250 0.71 +0.4
425,841 + MMP_RS02250 0.75 -0.8
425,868 - MMP_RS02250 0.77 +0.2
425,904 + MMP_RS02250 0.79 +0.4
426,002 - MMP_RS02250 0.87 -0.0
426,008 - MMP_RS02250 0.87 +0.5
426,026 - MMP_RS02250 0.88 +0.2
426,026 - MMP_RS02250 0.88 +0.2
426,027 + MMP_RS02250 0.88 -0.1
426,027 + MMP_RS02250 0.88 +0.2
426,062 - -0.3
426,063 + +0.6
426,186 - -0.1
426,221 + +0.5
426,385 - MMP_RS02255 0.32 +0.5
426,402 + MMP_RS02255 0.40 -0.1
426,402 + MMP_RS02255 0.40 -0.6
426,456 - MMP_RS02255 0.65 +0.2
426,461 - MMP_RS02255 0.68 +0.2
426,486 + MMP_RS02255 0.79 -0.8
426,506 - MMP_RS02255 0.88 +0.1
426,506 - MMP_RS02255 0.88 +0.0
426,567 - +0.5
426,568 + +0.6
426,571 - -0.6
426,578 + -0.0
426,609 + +0.7
426,613 - +0.1
426,654 + -0.1
426,672 + -0.0
426,688 - -0.9
426,733 + -0.0
426,780 - -0.9
426,842 - +0.1
426,868 - -0.6
426,869 + -0.9
426,874 - +0.7
426,874 - +0.2
426,874 - -0.2
426,875 + -0.5
426,875 + +0.0
426,883 - +0.0
426,884 + -0.5
427,051 - MMP_RS02260 0.18 +0.2
427,051 - MMP_RS02260 0.18 -0.2
427,052 + MMP_RS02260 0.18 +0.6
427,053 - MMP_RS02260 0.18 +0.1
427,063 - MMP_RS02260 0.20 +0.2
427,064 + MMP_RS02260 0.20 -0.2
427,123 + MMP_RS02260 0.29 +0.4

Or see this region's nucleotide sequence