Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02115 and MMP_RS02120 are separated by 201 nucleotides MMP_RS02120 and MMP_RS02125 are separated by 41 nucleotides MMP_RS02125 and MMP_RS02130 are separated by 10 nucleotides
MMP_RS02115: MMP_RS02115 - phosphopyruvate hydratase, at 393,105 to 394,397
_RS02115
MMP_RS02120: MMP_RS02120 - alanine--tRNA ligase, at 394,599 to 397,277
_RS02120
MMP_RS02125: MMP_RS02125 - pantoate kinase, at 397,319 to 398,191
_RS02125
MMP_RS02130: MMP_RS02130 - zinc metalloprotease HtpX, at 398,202 to 399,059
_RS02130
Position (kb)
394
395
396
397
398 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 393.926 kb on + strand at 393.937 kb on + strand at 394.320 kb on - strand at 394.401 kb on - strand at 394.406 kb on + strand at 394.443 kb on - strand at 394.453 kb on + strand at 394.479 kb on + strand at 394.491 kb on - strand at 394.577 kb on + strand at 394.620 kb on + strand at 394.779 kb on - strand at 394.780 kb on + strand at 395.033 kb on - strand at 395.669 kb on - strand at 395.788 kb on + strand at 395.790 kb on + strand at 395.914 kb on + strand at 397.131 kb on + strand at 397.309 kb on + strand at 397.336 kb on - strand at 397.361 kb on + strand at 397.870 kb on - strand at 397.871 kb on + strand at 397.872 kb on - strand at 397.873 kb on + strand at 397.900 kb on + strand at 397.998 kb on - strand at 397.998 kb on - strand at 398.136 kb on - strand at 398.190 kb on + strand at 398.211 kb on + strand at 398.268 kb on - strand at 398.269 kb on + strand at 398.271 kb on + strand at 398.271 kb on + strand at 398.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 393,926 + -2.0 393,937 + -2.0 394,320 - -1.8 394,401 - -0.1 394,406 + -0.4 394,443 - -0.5 394,453 + +0.5 394,479 + -0.7 394,491 - -0.5 394,577 + -1.1 394,620 + -2.2 394,779 - -1.1 394,780 + -1.7 395,033 - -2.2 395,669 - -0.1 395,788 + +0.4 395,790 + -1.8 395,914 + -1.4 397,131 + -1.5 397,309 + -3.0 397,336 - -1.9 397,361 + -3.6 397,870 - -2.4 397,871 + -0.8 397,872 - -1.8 397,873 + -0.7 397,900 + -1.3 397,998 - -1.4 397,998 - -0.9 398,136 - -3.6 398,190 + -0.4 398,211 + +0.1 398,268 - +1.0 398,269 + +0.7 398,271 + -0.2 398,271 + +0.8 398,271 + +0.3
Or see this region's nucleotide sequence