Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02105 and MMP_RS02110 are separated by 15 nucleotides MMP_RS02110 and MMP_RS02115 are separated by 241 nucleotides MMP_RS02115 and MMP_RS02120 are separated by 201 nucleotides
MMP_RS02105: MMP_RS02105 - uroporphyrinogen-III synthase, at 391,835 to 392,569
_RS02105
MMP_RS02110: MMP_RS02110 - hypothetical protein, at 392,585 to 392,863
_RS02110
MMP_RS02115: MMP_RS02115 - phosphopyruvate hydratase, at 393,105 to 394,397
_RS02115
MMP_RS02120: MMP_RS02120 - alanine--tRNA ligase, at 394,599 to 397,277
_RS02120
Position (kb)
393
394
395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 392.169 kb on + strand at 392.433 kb on - strand at 392.616 kb on - strand, within MMP_RS02110 at 392.616 kb on - strand, within MMP_RS02110 at 392.876 kb on - strand at 392.896 kb on + strand at 392.910 kb on + strand at 392.920 kb on + strand at 393.010 kb on - strand at 393.515 kb on - strand at 393.541 kb on + strand at 393.926 kb on + strand at 393.937 kb on + strand at 394.320 kb on - strand at 394.401 kb on - strand at 394.406 kb on + strand at 394.443 kb on - strand at 394.453 kb on + strand at 394.479 kb on + strand at 394.491 kb on - strand at 394.577 kb on + strand at 394.620 kb on + strand at 394.779 kb on - strand at 394.780 kb on + strand at 395.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 392,169 + -0.4 392,433 - -3.1 392,616 - MMP_RS02110 0.11 -2.9 392,616 - MMP_RS02110 0.11 -1.6 392,876 - -4.7 392,896 + -2.9 392,910 + -3.8 392,920 + +0.5 393,010 - +0.2 393,515 - -2.7 393,541 + -1.6 393,926 + -2.0 393,937 + -2.0 394,320 - -1.8 394,401 - -0.1 394,406 + -0.4 394,443 - -0.5 394,453 + +0.5 394,479 + -0.7 394,491 - -0.5 394,577 + -1.1 394,620 + -2.2 394,779 - -1.1 394,780 + -1.7 395,033 - -2.2
Or see this region's nucleotide sequence