Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01470 and MMP_RS01475 are separated by 18 nucleotides MMP_RS01475 and MMP_RS01480 are separated by 211 nucleotides MMP_RS01480 and MMP_RS01485 are separated by 251 nucleotides
MMP_RS01470: MMP_RS01470 - ATP-binding cassette domain-containing protein, at 271,467 to 272,258
_RS01470
MMP_RS01475: MMP_RS01475 - phosphosulfolactate synthase, at 272,277 to 273,032
_RS01475
MMP_RS01480: MMP_RS01480 - hydrogenase expression/formation protein HypE, at 273,244 to 274,248
_RS01480
MMP_RS01485: MMP_RS01485 - right-handed parallel beta-helix repeat-containing protein, at 274,500 to 277,178
_RS01485
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 272.382 kb on - strand, within MMP_RS01475 at 272.388 kb on + strand, within MMP_RS01475 at 272.427 kb on - strand, within MMP_RS01475 at 272.428 kb on + strand, within MMP_RS01475 at 272.428 kb on + strand, within MMP_RS01475 at 272.750 kb on - strand, within MMP_RS01475 at 272.764 kb on - strand, within MMP_RS01475 at 272.794 kb on + strand, within MMP_RS01475 at 272.794 kb on + strand, within MMP_RS01475 at 272.819 kb on + strand, within MMP_RS01475 at 272.819 kb on + strand, within MMP_RS01475 at 272.931 kb on - strand, within MMP_RS01475 at 272.937 kb on - strand, within MMP_RS01475 at 273.052 kb on + strand at 273.102 kb on - strand at 273.103 kb on + strand at 273.105 kb on + strand at 273.119 kb on + strand at 273.121 kb on + strand at 273.122 kb on - strand at 273.210 kb on - strand at 273.225 kb on - strand at 273.293 kb on - strand at 273.294 kb on + strand at 273.423 kb on - strand at 273.684 kb on + strand at 273.965 kb on - strand at 274.098 kb on + strand at 274.444 kb on - strand at 274.452 kb on + strand at 274.632 kb on + strand at 274.810 kb on - strand, within MMP_RS01485 at 274.853 kb on + strand, within MMP_RS01485
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 272,382 - MMP_RS01475 0.14 -2.2 272,388 + MMP_RS01475 0.15 -1.6 272,427 - MMP_RS01475 0.20 -3.2 272,428 + MMP_RS01475 0.20 -1.6 272,428 + MMP_RS01475 0.20 -1.6 272,750 - MMP_RS01475 0.63 -1.5 272,764 - MMP_RS01475 0.64 -2.5 272,794 + MMP_RS01475 0.68 -2.8 272,794 + MMP_RS01475 0.68 -2.3 272,819 + MMP_RS01475 0.72 -2.4 272,819 + MMP_RS01475 0.72 -2.0 272,931 - MMP_RS01475 0.87 -1.2 272,937 - MMP_RS01475 0.87 -1.8 273,052 + -2.5 273,102 - -0.2 273,103 + -1.4 273,105 + -2.1 273,119 + -1.5 273,121 + -1.2 273,122 - +0.1 273,210 - -1.4 273,225 - -2.6 273,293 - -1.5 273,294 + -1.6 273,423 - -2.8 273,684 + -3.0 273,965 - -1.7 274,098 + -1.6 274,444 - +0.8 274,452 + +0.4 274,632 + +1.3 274,810 - MMP_RS01485 0.12 +0.4 274,853 + MMP_RS01485 0.13 +0.3
Or see this region's nucleotide sequence