Strain Fitness in Pantoea sp. MT58 around IAI47_21470

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
33,634	-		IAI47_21460	0.73	-0.3
33,634	-		IAI47_21460	0.73	-2.2
33,803	+		IAI47_21460	0.89	+1.6
33,803	+		IAI47_21460	0.89	-0.1
33,803	+		IAI47_21460	0.89	+0.2
33,845	+				+1.0
33,845	+				-1.0
33,845	+				-0.4
33,845	+				+1.3
33,845	+				+0.3
33,846	-				-0.6
33,846	-				+3.7
33,882	+				-0.4
33,883	-				+2.5
33,883	-				+0.5
33,883	-				-0.8
33,921	-				-3.1
33,921	-				+0.5
33,921	-				-2.2
33,921	-				+0.5
33,927	+				-1.0
33,928	-				+1.1
33,928	-				+3.3
33,962	+				-1.2
34,044	-				+1.5
34,044	-				+0.2
34,049	+				-0.4
34,049	+				-0.1
34,050	-				-1.5
34,050	-				-0.9
34,051	+				+1.8
34,052	-				-0.7
34,056	+				+1.4
34,057	-				-0.1
34,057	-				+0.4
34,068	+				+1.2
34,071	+				-1.1
34,072	-				-0.1
34,072	-				-1.5
34,076	-				+0.3
34,120	+				+0.5
34,120	+				-1.0
34,175	+		IAI47_21465	0.12	-0.9
34,176	-		IAI47_21465	0.12	+5.1
34,176	-		IAI47_21465	0.12	-0.5
34,176	-		IAI47_21465	0.12	+0.1
34,176	-		IAI47_21465	0.12	-0.5
34,240	+		IAI47_21465	0.26	-0.5
34,240	+		IAI47_21465	0.26	-0.4
34,241	-		IAI47_21465	0.26	+0.5
34,241	-		IAI47_21465	0.26	+0.5
34,241	-		IAI47_21465	0.26	+1.6
34,275	+		IAI47_21465	0.33	+2.8
34,275	+		IAI47_21465	0.33	-0.2
34,282	-		IAI47_21465	0.35	+2.2
34,282	-		IAI47_21465	0.35	+0.5
34,282	-		IAI47_21465	0.35	-0.5
34,283	+		IAI47_21465	0.35	+0.4
34,283	+		IAI47_21465	0.35	+1.5
34,284	-		IAI47_21465	0.35	+0.8
34,284	-		IAI47_21465	0.35	-1.3
34,290	+		IAI47_21465	0.37	+3.1
34,291	-		IAI47_21465	0.37	+0.5
34,318	-		IAI47_21465	0.43	+2.0
34,318	-		IAI47_21465	0.43	+0.4
34,355	+		IAI47_21465	0.50	-2.3
34,359	+		IAI47_21465	0.51	-0.3
34,360	-		IAI47_21465	0.51	-1.0
34,365	+		IAI47_21465	0.53	+1.3
34,366	-		IAI47_21465	0.53	-1.7
34,366	-		IAI47_21465	0.53	+1.5
34,376	+		IAI47_21465	0.55	-1.5
34,377	-		IAI47_21465	0.55	+0.6
34,380	+		IAI47_21465	0.56	+0.2
34,381	-		IAI47_21465	0.56	+1.1
34,391	+		IAI47_21465	0.58	+0.7
34,391	+		IAI47_21465	0.58	+0.7
34,391	+		IAI47_21465	0.58	+1.0
34,391	+		IAI47_21465	0.58	-0.9
34,392	-		IAI47_21465	0.58	-0.7
34,416	-		IAI47_21465	0.63	-0.1
34,416	-		IAI47_21465	0.63	-1.1
34,434	-		IAI47_21465	0.67	-0.1
34,442	+		IAI47_21465	0.69	-2.3
34,442	+		IAI47_21465	0.69	-0.5
34,442	+		IAI47_21465	0.69	+0.7
34,442	+		IAI47_21465	0.69	-0.3
34,443	-		IAI47_21465	0.69	+2.5
34,505	+		IAI47_21465	0.82	+0.1
34,505	+		IAI47_21465	0.82	+0.8
34,505	+		IAI47_21465	0.82	-2.0
34,506	-		IAI47_21465	0.83	-2.6
34,507	+		IAI47_21465	0.83	+0.7
34,507	+		IAI47_21465	0.83	+1.7
34,507	+		IAI47_21465	0.83	+0.3
34,508	-		IAI47_21465	0.83	+1.1
34,508	-		IAI47_21465	0.83	-3.5
34,508	-		IAI47_21465	0.83	+2.5
34,508	-		IAI47_21465	0.83	-0.1
34,508	-		IAI47_21465	0.83	-1.2
34,533	+		IAI47_21465	0.88	+4.3
34,533	+		IAI47_21465	0.88	+0.9
34,533	+		IAI47_21465	0.88	-0.9
34,534	-		IAI47_21465	0.89	+0.1
34,534	-		IAI47_21465	0.89	-0.2
34,534	-		IAI47_21465	0.89	-1.7
34,534	-		IAI47_21465	0.89	-2.4
34,534	-		IAI47_21465	0.89	+0.5
34,550	+				+1.3
34,551	-				-0.1
34,551	-				+0.8
34,592	+				-1.3
34,592	+				+1.6
34,592	+				+0.1
34,593	-				+0.1
34,606	+				+2.6
34,617	+				-0.9
34,617	+				-1.7
34,617	+				-0.5
34,618	-				+0.2
34,618	-				+0.5
34,652	+		IAI47_21470	0.11	-2.6
34,652	+		IAI47_21470	0.11	-2.3
34,653	-		IAI47_21470	0.11	+1.2
34,680	-		IAI47_21470	0.19	+0.2
34,680	-		IAI47_21470	0.19	-0.1
34,680	-		IAI47_21470	0.19	-0.8
34,680	-		IAI47_21470	0.19	+0.5
34,706	+		IAI47_21470	0.27	+2.5
34,706	+		IAI47_21470	0.27	+0.1
34,706	+		IAI47_21470	0.27	-1.3
34,707	-		IAI47_21470	0.28	+0.3
34,707	-		IAI47_21470	0.28	-0.9
34,708	+		IAI47_21470	0.28	+1.1
34,709	-		IAI47_21470	0.28	+1.2
34,709	-		IAI47_21470	0.28	-1.5
34,715	+		IAI47_21470	0.30	-0.5
34,715	+		IAI47_21470	0.30	+1.2
34,715	+		IAI47_21470	0.30	-1.1
34,715	+		IAI47_21470	0.30	-0.9
34,716	-		IAI47_21470	0.30	-2.0
34,757	+		IAI47_21470	0.43	-1.8
34,757	+		IAI47_21470	0.43	-1.2
34,762	+		IAI47_21470	0.44	+2.8
34,762	+		IAI47_21470	0.44	+2.6
34,762	+		IAI47_21470	0.44	+0.1
34,763	-		IAI47_21470	0.45	+0.5
34,763	-		IAI47_21470	0.45	+0.5
34,763	-		IAI47_21470	0.45	-1.3
34,783	+		IAI47_21470	0.51	+1.3
34,783	+		IAI47_21470	0.51	+0.9
34,783	+		IAI47_21470	0.51	-1.5
34,783	+		IAI47_21470	0.51	-0.3
34,783	+		IAI47_21470	0.51	-0.9
34,784	-		IAI47_21470	0.51	-0.7
34,784	-		IAI47_21470	0.51	+0.8
34,784	-		IAI47_21470	0.51	+3.7
34,784	-		IAI47_21470	0.51	-1.0
34,784	-		IAI47_21470	0.51	+0.8
34,784	-		IAI47_21470	0.51	+1.9
34,796	-		IAI47_21470	0.55	-0.4
34,805	-		IAI47_21470	0.57	+1.1
34,825	+		IAI47_21470	0.63	+2.5
34,878	+		IAI47_21470	0.79	+2.2
34,879	-		IAI47_21470	0.80	+0.2
34,893	-		IAI47_21470	0.84	-1.1
34,893	-		IAI47_21470	0.84	-0.3
34,897	+		IAI47_21470	0.85	+1.5
34,932	+				+0.9
34,932	+				+0.5
34,932	+				-0.5
34,932	+				-3.3
34,932	+				-0.6
34,932	+				+1.1
34,933	-				-2.8
34,933	-				+0.8
34,933	-				-2.4
34,933	-				+3.8
34,933	-				-1.5
34,933	-				-2.0
34,933	-				-0.2
34,933	-				-0.5
34,934	+				-1.2
34,935	-				+0.1
34,945	+				-1.7
34,945	+				+2.3
34,945	+				+1.1
34,945	+				+0.5
34,945	+				+3.1
34,946	-				-0.9
34,946	-				-0.1
34,946	-				-0.8
34,946	-				+0.1
34,946	-				-0.0
34,946	-				-2.5
34,946	-				-1.1
34,946	-				+4.1
34,946	-				+1.1
34,958	+				+0.1
34,959	-				+0.8
34,959	-				-0.9
34,959	-				-1.7
34,995	+				-0.8
34,995	+				+0.5
34,995	+				+1.2
34,995	+				+1.1
34,996	-				+0.0
34,996	-				+0.1
34,996	-				-1.1
34,996	-				+0.3
34,996	-				+4.3
34,996	-				+1.1
34,998	+				-1.3
34,998	+				-0.0
34,998	+				-0.2
34,999	-				+1.0
34,999	-				-0.5
35,012	+		IAI47_21475	0.11	+0.9
35,033	+		IAI47_21475	0.15	-0.6
35,034	-		IAI47_21475	0.16	-0.3
35,072	+		IAI47_21475	0.23	-2.8
35,073	-		IAI47_21475	0.24	-1.4
35,086	-		IAI47_21475	0.26	+0.5
35,098	-		IAI47_21475	0.29	+0.5
35,098	-		IAI47_21475	0.29	+0.5
35,104	+		IAI47_21475	0.30	+0.5
35,115	+		IAI47_21475	0.32	-0.6
35,115	+		IAI47_21475	0.32	+1.4
35,116	-		IAI47_21475	0.32	+0.5
35,116	-		IAI47_21475	0.32	-0.8
35,116	-		IAI47_21475	0.32	-2.2
35,134	-		IAI47_21475	0.36	+1.3
35,137	+		IAI47_21475	0.37	+0.5
35,137	+		IAI47_21475	0.37	-0.1
35,138	-		IAI47_21475	0.37	-0.1
35,138	-		IAI47_21475	0.37	-2.8
35,138	-		IAI47_21475	0.37	+1.8
35,138	-		IAI47_21475	0.37	-0.6
35,143	+		IAI47_21475	0.38	-1.3
35,144	-		IAI47_21475	0.38	+2.5
35,147	+		IAI47_21475	0.39	-0.8
35,148	-		IAI47_21475	0.39	+1.7
35,169	-		IAI47_21475	0.43	+2.5
35,169	-		IAI47_21475	0.43	+0.5
35,172	+		IAI47_21475	0.44	+0.5
35,172	+		IAI47_21475	0.44	+2.0
35,173	-		IAI47_21475	0.44	+0.5
35,188	-		IAI47_21475	0.47	+2.6
35,203	+		IAI47_21475	0.50	+0.8
35,203	+		IAI47_21475	0.50	+0.2
35,203	+		IAI47_21475	0.50	+0.4
35,204	-		IAI47_21475	0.50	+3.4
35,271	+		IAI47_21475	0.64	-0.9
35,271	+		IAI47_21475	0.64	+0.2
35,317	-		IAI47_21475	0.73	+2.5
35,317	-		IAI47_21475	0.73	-1.1
35,322	+		IAI47_21475	0.74	-2.1
35,322	+		IAI47_21475	0.74	+1.3
35,332	+		IAI47_21475	0.76	-0.5
35,332	+		IAI47_21475	0.76	-1.0
35,332	+		IAI47_21475	0.76	+0.5
35,332	+		IAI47_21475	0.76	-1.9
35,333	-		IAI47_21475	0.76	-1.7
35,333	-		IAI47_21475	0.76	+1.5
35,333	-		IAI47_21475	0.76	-3.2
35,354	-		IAI47_21475	0.81	+0.5
35,359	+		IAI47_21475	0.82	+1.1
35,359	+		IAI47_21475	0.82	+0.7
35,362	-		IAI47_21475	0.82	+1.6
35,362	-		IAI47_21475	0.82	-2.1
35,362	-		IAI47_21475	0.82	+0.5
35,418	-				+0.5
35,428	+				+1.1
35,429	-				-1.6
35,429	-				-0.5
35,432	+				+1.6
35,432	+				-0.0
35,432	+				-2.3
35,433	-				-0.9
35,433	-				+1.0
35,433	-				-0.5
35,433	-				+0.1
35,487	-				+0.5
35,563	-				+0.2
35,584	+				+0.3
35,584	+				-0.4
35,585	-				+3.5
35,585	-				-1.0
35,585	-				-1.6
35,661	+				+1.6
35,661	+				+2.5
35,661	+				+0.7
35,661	+				+0.6
35,662	-				-0.9
35,662	-				+1.0
35,662	-				+0.0
35,843	+				-0.2
35,843	+				+0.5
35,848	+				+2.8
35,848	+				+0.1
35,848	+				+2.2
35,849	-				+2.3
35,856	+				-0.1
35,866	+				+0.8
35,867	-				-3.1
35,895	+				-0.9
35,895	+				-0.4
35,896	-				-0.7
35,934	+				-0.2
35,935	-				-1.1
35,935	-				-1.9
35,943	-				+0.4
35,943	-				-1.3