Strain Fitness in Pantoea sp. MT58 around IAI47_17385

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,679,790	+		IAI47_17375	0.58	+0.9
3,679,790	+		IAI47_17375	0.58	-1.7
3,679,790	+		IAI47_17375	0.58	-1.4
3,679,791	-		IAI47_17375	0.58	-0.7
3,679,791	-		IAI47_17375	0.58	+1.7
3,679,791	-		IAI47_17375	0.58	-0.7
3,679,801	+		IAI47_17375	0.59	-0.7
3,679,801	+		IAI47_17375	0.59	-0.3
3,679,801	+		IAI47_17375	0.59	+1.8
3,679,801	+		IAI47_17375	0.59	-0.6
3,679,801	+		IAI47_17375	0.59	+1.0
3,679,802	-		IAI47_17375	0.59	-0.9
3,679,802	-		IAI47_17375	0.59	-0.9
3,679,944	+		IAI47_17375	0.67	+1.3
3,679,944	+		IAI47_17375	0.67	+0.3
3,679,944	+		IAI47_17375	0.67	-1.6
3,679,944	+		IAI47_17375	0.67	+0.6
3,679,945	-		IAI47_17375	0.67	+1.6
3,679,945	-		IAI47_17375	0.67	-1.9
3,679,991	+		IAI47_17375	0.69	-1.1
3,679,991	+		IAI47_17375	0.69	-0.0
3,679,991	+		IAI47_17375	0.69	-1.9
3,679,991	+		IAI47_17375	0.69	-2.5
3,679,992	-		IAI47_17375	0.70	-2.5
3,679,999	+		IAI47_17375	0.70	+0.4
3,679,999	+		IAI47_17375	0.70	-0.5
3,680,000	-		IAI47_17375	0.70	-0.5
3,680,000	-		IAI47_17375	0.70	+1.2
3,680,000	-		IAI47_17375	0.70	+1.4
3,680,000	-		IAI47_17375	0.70	-2.6
3,680,000	-		IAI47_17375	0.70	-1.3
3,680,046	+		IAI47_17375	0.73	+0.1
3,680,047	-		IAI47_17375	0.73	+1.5
3,680,047	-		IAI47_17375	0.73	-1.8
3,680,099	+		IAI47_17375	0.76	-0.7
3,680,099	+		IAI47_17375	0.76	+2.1
3,680,099	+		IAI47_17375	0.76	+0.2
3,680,099	+		IAI47_17375	0.76	-1.4
3,680,099	+		IAI47_17375	0.76	-1.6
3,680,099	+		IAI47_17375	0.76	+0.3
3,680,099	+		IAI47_17375	0.76	-0.7
3,680,100	-		IAI47_17375	0.76	-0.7
3,680,100	-		IAI47_17375	0.76	+0.6
3,680,100	-		IAI47_17375	0.76	+0.8
3,680,123	-		IAI47_17375	0.77	-0.6
3,680,124	+		IAI47_17375	0.77	-1.7
3,680,125	-		IAI47_17375	0.77	+3.2
3,680,136	+		IAI47_17375	0.78	+0.2
3,680,136	+		IAI47_17375	0.78	+0.9
3,680,136	+		IAI47_17375	0.78	-0.3
3,680,137	-		IAI47_17375	0.78	+2.5
3,680,142	+		IAI47_17375	0.78	+1.5
3,680,142	+		IAI47_17375	0.78	+1.4
3,680,142	+		IAI47_17375	0.78	-0.0
3,680,142	+		IAI47_17375	0.78	+0.8
3,680,142	+		IAI47_17375	0.78	+1.4
3,680,142	+		IAI47_17375	0.78	-2.5
3,680,143	-		IAI47_17375	0.78	+0.1
3,680,143	-		IAI47_17375	0.78	+1.0
3,680,143	-		IAI47_17375	0.78	+0.1
3,680,143	-		IAI47_17375	0.78	-0.7
3,680,143	-		IAI47_17375	0.78	+0.4
3,680,143	-		IAI47_17375	0.78	-1.7
3,680,200	+		IAI47_17375	0.81	-0.5
3,680,200	+		IAI47_17375	0.81	-0.1
3,680,201	-		IAI47_17375	0.81	-0.9
3,680,201	-		IAI47_17375	0.81	+0.0
3,680,201	-		IAI47_17375	0.81	-1.3
3,680,271	+		IAI47_17375	0.85	-2.7
3,680,271	+		IAI47_17375	0.85	-1.1
3,680,272	-		IAI47_17375	0.85	-0.8
3,680,272	-		IAI47_17375	0.85	+0.1
3,680,280	-		IAI47_17375	0.86	-0.2
3,680,280	-		IAI47_17375	0.86	-1.0
3,680,280	-		IAI47_17375	0.86	-1.3
3,680,280	-		IAI47_17375	0.86	-0.0
3,680,280	-		IAI47_17375	0.86	+1.0
3,680,501	+				+0.5
3,680,501	+				-0.3
3,680,501	+				-0.3
3,680,501	+				-1.5
3,680,501	+				-1.3
3,680,501	+				+1.6
3,680,501	+				-0.1
3,680,502	-				+0.4
3,680,502	-				+0.7
3,680,502	-				+0.1
3,680,502	-				-0.1
3,680,505	-				+2.5
3,680,505	-				+0.5
3,680,515	+				+2.2
3,680,515	+				-1.5
3,680,515	+				+0.7
3,680,515	+				-1.1
3,680,515	+				+3.4
3,680,515	+				-0.4
3,680,515	+				+1.2
3,680,515	+				-0.7
3,680,515	+				+0.3
3,680,515	+				+0.1
3,680,516	-				-2.0
3,680,516	-				-0.1
3,680,516	-				-0.8
3,680,516	-				-2.2
3,680,516	-				-0.1
3,680,526	+				+2.5
3,680,527	-				+0.5
3,680,527	-				-3.4
3,680,527	-				-0.6
3,680,527	-				+1.3
3,680,535	-				+2.2
3,680,619	+		IAI47_17380	0.26	-0.7
3,680,619	+		IAI47_17380	0.26	-2.0
3,680,619	+		IAI47_17380	0.26	+0.7
3,680,620	-		IAI47_17380	0.26	-0.6
3,680,620	-		IAI47_17380	0.26	-2.3
3,680,620	-		IAI47_17380	0.26	-2.3
3,680,620	-		IAI47_17380	0.26	+0.1
3,680,668	+		IAI47_17380	0.46	+1.2
3,680,668	+		IAI47_17380	0.46	-1.7
3,680,669	-		IAI47_17380	0.47	+0.1
3,680,700	+		IAI47_17380	0.60	+1.0
3,680,718	+		IAI47_17380	0.67	-0.4
3,680,718	+		IAI47_17380	0.67	+1.2
3,680,719	-		IAI47_17380	0.68	+0.8
3,680,726	+		IAI47_17380	0.71	-1.1
3,680,795	+				-1.7
3,680,795	+				+0.4
3,680,795	+				+0.5
3,680,809	+		IAI47_17385	0.29	+0.7
3,680,809	+		IAI47_17385	0.29	+1.7
3,680,809	+		IAI47_17385	0.29	-0.2
3,680,810	-		IAI47_17385	0.29	-0.5
3,680,810	-		IAI47_17385	0.29	-0.8
3,680,822	-		IAI47_17385	0.35	+0.1
3,680,822	-		IAI47_17385	0.35	+3.7
3,680,855	-		IAI47_17385	0.49	+1.6
3,680,959	+				+1.5
3,680,959	+				-0.9
3,680,960	-				-0.9
3,680,960	-				+2.7
3,680,960	-				+1.7
3,680,960	-				-0.4
3,680,960	-				-0.6
3,680,962	+				-1.9
3,680,962	+				-0.1
3,680,963	-				-2.6
3,680,963	-				+1.3
3,680,963	-				+0.5
3,680,966	+				+1.6
3,680,967	-				+0.1
3,680,967	-				-0.1
3,680,979	+				-1.0
3,680,979	+				+0.2
3,680,979	+				+2.6
3,680,979	+				+0.2
3,680,979	+				-1.2
3,680,979	+				+2.3
3,680,979	+				-0.1
3,680,979	+				+0.4
3,680,980	-				-0.6
3,680,980	-				-1.6
3,680,980	-				+0.9
3,680,980	-				-1.0
3,680,980	-				-0.7
3,680,980	-				+0.2
3,680,980	-				-0.8
3,680,980	-				-0.2
3,680,980	-				-0.8
3,680,987	+				-1.7
3,680,987	+				-0.1
3,680,987	+				+1.6
3,680,987	+				-0.1
3,680,987	+				+0.0
3,680,988	-				+1.1
3,681,104	+				-1.1
3,681,105	-				+1.5
3,681,197	+		IAI47_17390	0.11	+3.1
3,681,197	+		IAI47_17390	0.11	+0.9
3,681,198	-		IAI47_17390	0.11	-0.7
3,681,318	+		IAI47_17390	0.19	-2.4
3,681,318	+		IAI47_17390	0.19	+0.3
3,681,319	-		IAI47_17390	0.19	-0.1
3,681,319	-		IAI47_17390	0.19	+0.9
3,681,319	-		IAI47_17390	0.19	-0.0
3,681,319	-		IAI47_17390	0.19	+1.2
3,681,461	+		IAI47_17390	0.28	+1.3
3,681,461	+		IAI47_17390	0.28	+1.5
3,681,461	+		IAI47_17390	0.28	-1.7
3,681,461	+		IAI47_17390	0.28	+0.6
3,681,461	+		IAI47_17390	0.28	+2.3
3,681,461	+		IAI47_17390	0.28	-3.0
3,681,461	+		IAI47_17390	0.28	+0.6
3,681,461	+		IAI47_17390	0.28	+0.3
3,681,461	+		IAI47_17390	0.28	+0.9
3,681,461	+		IAI47_17390	0.28	-0.9
3,681,461	+		IAI47_17390	0.28	+0.1
3,681,461	+		IAI47_17390	0.28	-2.5
3,681,462	-		IAI47_17390	0.28	+0.5
3,681,462	-		IAI47_17390	0.28	+0.1
3,681,462	-		IAI47_17390	0.28	-0.3
3,681,462	-		IAI47_17390	0.28	+0.5
3,681,462	-		IAI47_17390	0.28	+0.3
3,681,462	-		IAI47_17390	0.28	-1.9
3,681,462	-		IAI47_17390	0.28	+1.3
3,681,462	-		IAI47_17390	0.28	-0.8
3,681,462	-		IAI47_17390	0.28	-0.9
3,681,462	-		IAI47_17390	0.28	-1.9
3,681,462	-		IAI47_17390	0.28	+0.9
3,681,462	-		IAI47_17390	0.28	-0.5
3,681,462	-		IAI47_17390	0.28	+0.0
3,681,471	+		IAI47_17390	0.28	-1.8
3,681,471	+		IAI47_17390	0.28	+1.5
3,681,472	-		IAI47_17390	0.28	-0.2
3,681,483	+		IAI47_17390	0.29	-2.1
3,681,483	+		IAI47_17390	0.29	+0.2
3,681,484	-		IAI47_17390	0.29	+1.0
3,681,518	+		IAI47_17390	0.31	-0.6
3,681,518	+		IAI47_17390	0.31	+1.0
3,681,518	+		IAI47_17390	0.31	-0.0
3,681,519	-		IAI47_17390	0.31	-1.3
3,681,519	-		IAI47_17390	0.31	-1.6
3,681,527	+		IAI47_17390	0.32	+0.7
3,681,527	+		IAI47_17390	0.32	+1.7
3,681,528	-		IAI47_17390	0.32	-0.2
3,681,635	+		IAI47_17390	0.39	-0.9
3,681,635	+		IAI47_17390	0.39	+0.2
3,681,635	+		IAI47_17390	0.39	-0.7
3,681,637	+		IAI47_17390	0.39	+0.5
3,681,637	+		IAI47_17390	0.39	-0.1
3,681,637	+		IAI47_17390	0.39	+0.0
3,681,637	+		IAI47_17390	0.39	-1.8
3,681,637	+		IAI47_17390	0.39	+0.9
3,681,637	+		IAI47_17390	0.39	+1.2
3,681,637	+		IAI47_17390	0.39	-1.5
3,681,637	+		IAI47_17390	0.39	+1.3
3,681,637	+		IAI47_17390	0.39	-0.1
3,681,637	+		IAI47_17390	0.39	+1.7
3,681,637	+		IAI47_17390	0.39	-0.7
3,681,637	+		IAI47_17390	0.39	+0.1
3,681,637	+		IAI47_17390	0.39	+0.9
3,681,637	+		IAI47_17390	0.39	+1.0
3,681,637	+		IAI47_17390	0.39	-1.3
3,681,637	+		IAI47_17390	0.39	-1.7
3,681,638	-		IAI47_17390	0.39	-2.0
3,681,638	-		IAI47_17390	0.39	+1.5
3,681,638	-		IAI47_17390	0.39	-1.4
3,681,638	-		IAI47_17390	0.39	-1.2
3,681,638	-		IAI47_17390	0.39	-2.5
3,681,638	-		IAI47_17390	0.39	-0.2
3,681,638	-		IAI47_17390	0.39	+0.6
3,681,638	-		IAI47_17390	0.39	+0.1
3,681,638	-		IAI47_17390	0.39	-2.7
3,681,638	-		IAI47_17390	0.39	-0.7
3,681,638	-		IAI47_17390	0.39	+0.3
3,681,638	-		IAI47_17390	0.39	+1.6
3,681,638	-		IAI47_17390	0.39	-1.2
3,681,638	-		IAI47_17390	0.39	+2.1
3,681,638	-		IAI47_17390	0.39	+1.5
3,681,638	-		IAI47_17390	0.39	+0.9
3,681,702	+		IAI47_17390	0.43	-1.2
3,681,702	+		IAI47_17390	0.43	-0.2
3,681,727	+		IAI47_17390	0.44	+3.0
3,681,727	+		IAI47_17390	0.44	-2.5
3,681,728	-		IAI47_17390	0.44	+0.6
3,681,883	+		IAI47_17390	0.54	+0.7
3,681,884	-		IAI47_17390	0.54	+1.6
3,681,884	-		IAI47_17390	0.54	-0.6
3,681,884	-		IAI47_17390	0.54	-3.1
3,681,884	-		IAI47_17390	0.54	-0.1
3,681,932	+		IAI47_17390	0.57	-1.0
3,681,965	+		IAI47_17390	0.59	+1.5
3,681,965	+		IAI47_17390	0.59	-2.3
3,681,966	-		IAI47_17390	0.59	-1.9