Strain Fitness in Pantoea sp. MT58 around IAI47_10300

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,177,434	-				-0.3
2,177,460	+				-1.9
2,177,460	+				-1.1
2,177,460	+				-1.9
2,177,460	+				+0.9
2,177,460	+				-0.6
2,177,460	+				-1.6
2,177,461	-				+0.1
2,177,461	-				+0.6
2,177,461	-				-0.5
2,177,467	+				+1.3
2,177,467	+				+0.1
2,177,467	+				+1.4
2,177,467	+				+1.9
2,177,467	+				-0.1
2,177,467	+				-0.5
2,177,467	+				+0.6
2,177,468	-				-1.7
2,177,468	-				-1.0
2,177,468	-				+0.4
2,177,468	-				+0.2
2,177,470	+				+1.0
2,177,470	+				+1.0
2,177,470	+				-1.6
2,177,470	+				+2.5
2,177,470	+				-1.0
2,177,470	+				+1.0
2,177,470	+				-1.7
2,177,470	+				-0.1
2,177,470	+				+0.1
2,177,471	-				-0.1
2,177,471	-				-0.7
2,177,471	-				-1.7
2,177,471	-				+2.9
2,177,471	-				+1.0
2,177,471	-				+1.4
2,177,471	-				-1.6
2,177,471	-				-0.9
2,177,471	-				-2.5
2,177,471	-				-0.3
2,177,472	+				-1.7
2,177,472	+				-0.0
2,177,472	+				-1.7
2,177,472	+				-1.7
2,177,472	+				+1.6
2,177,472	+				-1.5
2,177,472	+				+1.6
2,177,472	+				+0.4
2,177,472	+				-2.7
2,177,472	+				-0.8
2,177,472	+				+0.7
2,177,472	+				+0.4
2,177,473	-				+0.9
2,177,473	-				-0.8
2,177,473	-				+1.0
2,177,473	-				-1.4
2,177,473	-				-2.1
2,177,473	-				+2.2
2,177,473	-				-2.6
2,177,473	-				+0.5
2,177,473	-				+1.3
2,177,473	-				+0.0
2,177,476	+				+0.7
2,177,476	+				-0.4
2,177,476	+				-1.7
2,177,476	+				+1.0
2,177,476	+				+0.4
2,177,477	-				-1.7
2,177,477	-				-1.2
2,177,477	-				+0.6
2,177,477	-				+1.7
2,177,477	-				+1.0
2,177,477	-				-2.8
2,177,521	-				+2.0
2,177,524	+				+2.9
2,177,527	-				-2.7
2,177,597	-				-0.5
2,177,597	-				+0.8
2,177,667	+		IAI47_10290	0.27	+0.2
2,177,667	+		IAI47_10290	0.27	-3.3
2,177,689	+		IAI47_10290	0.36	-3.2
2,177,689	+		IAI47_10290	0.36	-0.9
2,177,689	+		IAI47_10290	0.36	-2.6
2,177,689	+		IAI47_10290	0.36	+0.7
2,177,689	+		IAI47_10290	0.36	-0.1
2,177,690	-		IAI47_10290	0.36	+1.1
2,177,690	-		IAI47_10290	0.36	+1.2
2,177,690	-		IAI47_10290	0.36	-0.3
2,177,690	-		IAI47_10290	0.36	+1.4
2,177,690	-		IAI47_10290	0.36	+0.4
2,177,690	-		IAI47_10290	0.36	+1.4
2,177,708	+		IAI47_10290	0.43	+0.4
2,177,759	+		IAI47_10290	0.62	+0.1
2,177,759	+		IAI47_10290	0.62	-0.1
2,177,759	+		IAI47_10290	0.62	-2.0
2,177,760	-		IAI47_10290	0.62	+2.3
2,177,760	-		IAI47_10290	0.62	-3.7
2,177,760	-		IAI47_10290	0.62	+0.6
2,177,806	+		IAI47_10290	0.80	-0.7
2,177,807	-		IAI47_10290	0.80	-0.7
2,177,807	-		IAI47_10290	0.80	+0.3
2,177,852	+				+3.0
2,177,853	-				+0.4
2,177,867	+				-1.4
2,177,867	+				-0.9
2,177,868	-				-0.1
2,177,868	-				-1.1
2,177,925	+		IAI47_10295	0.15	-0.7
2,177,925	+		IAI47_10295	0.15	+0.6
2,177,926	-		IAI47_10295	0.15	-0.6
2,177,926	-		IAI47_10295	0.15	+1.2
2,177,926	-		IAI47_10295	0.15	+0.9
2,177,961	+		IAI47_10295	0.23	+2.0
2,177,961	+		IAI47_10295	0.23	+0.6
2,177,962	-		IAI47_10295	0.23	-3.9
2,177,962	-		IAI47_10295	0.23	-1.4
2,177,979	+		IAI47_10295	0.27	+1.7
2,177,979	+		IAI47_10295	0.27	-1.1
2,178,115	+		IAI47_10295	0.58	-1.7
2,178,116	-		IAI47_10295	0.59	-1.1
2,178,123	+		IAI47_10295	0.60	-1.4
2,178,123	+		IAI47_10295	0.60	+0.4
2,178,124	-		IAI47_10295	0.60	-0.6
2,178,124	-		IAI47_10295	0.60	+0.4
2,178,124	-		IAI47_10295	0.60	-0.1
2,178,124	-		IAI47_10295	0.60	-0.7
2,178,124	-		IAI47_10295	0.60	-0.6
2,178,126	+		IAI47_10295	0.61	+2.4
2,178,126	+		IAI47_10295	0.61	+2.4
2,178,126	+		IAI47_10295	0.61	+1.0
2,178,126	+		IAI47_10295	0.61	+2.4
2,178,126	+		IAI47_10295	0.61	-0.1
2,178,127	-		IAI47_10295	0.61	+1.2
2,178,229	-		IAI47_10295	0.85	-0.0
2,178,229	-		IAI47_10295	0.85	-1.6
2,178,243	+		IAI47_10295	0.88	+2.9
2,178,244	-		IAI47_10295	0.88	-1.6
2,178,327	+				-2.8
2,178,337	-				+1.6
2,178,337	-				+0.4
2,178,383	+				-2.4
2,178,384	-				+1.4
2,178,437	+		IAI47_10300	0.16	+2.5
2,178,437	+		IAI47_10300	0.16	+1.1
2,178,438	-		IAI47_10300	0.16	+0.4
2,178,438	-		IAI47_10300	0.16	-0.0
2,178,438	-		IAI47_10300	0.16	+0.3
2,178,438	-		IAI47_10300	0.16	+1.4
2,178,438	-		IAI47_10300	0.16	+0.4
2,178,438	-		IAI47_10300	0.16	-0.1
2,178,485	-		IAI47_10300	0.30	-0.3
2,178,564	+		IAI47_10300	0.53	-2.6
2,178,564	+		IAI47_10300	0.53	+0.2
2,178,566	+		IAI47_10300	0.54	+0.2
2,178,566	+		IAI47_10300	0.54	+1.7
2,178,566	+		IAI47_10300	0.54	-1.7
2,178,567	-		IAI47_10300	0.54	+1.9
2,178,567	-		IAI47_10300	0.54	+1.4
2,178,567	-		IAI47_10300	0.54	-2.8
2,178,567	-		IAI47_10300	0.54	-1.1
2,178,567	-		IAI47_10300	0.54	-0.4
2,178,567	-		IAI47_10300	0.54	-1.1
2,178,567	-		IAI47_10300	0.54	-1.1
2,178,567	-		IAI47_10300	0.54	+2.8
2,178,603	+		IAI47_10300	0.65	+2.4
2,178,603	+		IAI47_10300	0.65	-0.9
2,178,603	+		IAI47_10300	0.65	-0.1
2,178,603	+		IAI47_10300	0.65	-1.0
2,178,604	-		IAI47_10300	0.65	-2.0
2,178,604	-		IAI47_10300	0.65	+0.4
2,178,604	-		IAI47_10300	0.65	+2.7
2,178,604	-		IAI47_10300	0.65	-0.1
2,178,604	-		IAI47_10300	0.65	-1.3
2,178,604	-		IAI47_10300	0.65	+0.8
2,178,604	-		IAI47_10300	0.65	-0.2
2,178,678	+		IAI47_10300	0.87	-0.4
2,178,679	-		IAI47_10300	0.87	+0.2
2,178,695	-				-0.4
2,178,705	+				-0.1
2,178,705	+				+0.9
2,178,705	+				+1.5
2,178,779	+				+0.6
2,178,779	+				-1.6
2,178,793	+				-1.4
2,178,794	-				+2.6
2,178,794	-				+1.0
2,178,794	-				-0.5
2,178,843	+				+1.2
2,178,843	+				+0.6
2,178,844	-				+1.0
2,178,850	+				+0.1
2,178,851	-				-0.1
2,178,851	-				+0.3
2,178,851	-				-2.1
2,178,851	-				+2.4
2,178,851	-				-1.4
2,178,851	-				-0.3
2,178,851	-				-1.5
2,178,885	+				-0.6
2,178,897	-				+0.6
2,178,903	+				+0.7
2,178,939	+				-0.6
2,178,939	+				-1.9
2,178,939	+				+1.6
2,178,940	-				+0.9
2,178,979	+				-0.4
2,179,002	+				-1.6
2,179,002	+				-2.6
2,179,002	+				-0.9
2,179,002	+				+0.1
2,179,002	+				-1.6
2,179,002	+				+1.4
2,179,003	-				+0.1
2,179,003	-				-2.4
2,179,003	-				+1.0
2,179,003	-				+0.0
2,179,003	-				+1.1
2,179,003	-				-1.1
2,179,004	+				-0.5
2,179,004	+				+1.4
2,179,004	+				+1.3
2,179,004	+				+0.9
2,179,004	+				+0.9
2,179,004	+				+0.9
2,179,005	-				-1.7
2,179,005	-				-0.6
2,179,005	-				-0.8
2,179,005	-				+1.1
2,179,005	-				-2.0
2,179,005	-				-1.2
2,179,009	-				-1.2
2,179,009	-				-1.5
2,179,019	-				-1.3
2,179,019	-				-0.2
2,179,031	+				-0.1
2,179,031	+				+1.4
2,179,031	+				+0.7
2,179,032	-				+0.4
2,179,032	-				+1.0
2,179,054	+				-1.6
2,179,054	+				-0.1
2,179,054	+				-1.5
2,179,054	+				+1.0
2,179,055	-				+1.4
2,179,063	+				+0.6
2,179,063	+				-0.1
2,179,063	+				-2.1
2,179,063	+				-2.3
2,179,064	-				-1.4
2,179,064	-				+0.1
2,179,064	-				+1.7
2,179,072	+				-1.4
2,179,072	+				-0.4
2,179,073	-				+1.0
2,179,073	-				-0.9
2,179,073	-				+1.0
2,179,249	-		IAI47_10305	0.19	-0.1
2,179,262	+		IAI47_10305	0.20	+0.4
2,179,263	-		IAI47_10305	0.21	-0.1
2,179,267	-		IAI47_10305	0.21	-1.7
2,179,267	-		IAI47_10305	0.21	+0.8
2,179,307	+		IAI47_10305	0.24	+2.7
2,179,307	+		IAI47_10305	0.24	-1.6
2,179,533	-		IAI47_10305	0.44	+1.6
2,179,665	+		IAI47_10305	0.55	+2.1
2,179,665	+		IAI47_10305	0.55	-0.1
2,179,665	+		IAI47_10305	0.55	-2.6
2,179,665	+		IAI47_10305	0.55	-1.2
2,179,665	+		IAI47_10305	0.55	+1.4
2,179,665	+		IAI47_10305	0.55	+1.9
2,179,665	+		IAI47_10305	0.55	+1.6
2,179,665	+		IAI47_10305	0.55	+2.0
2,179,665	+		IAI47_10305	0.55	-0.4
2,179,665	+		IAI47_10305	0.55	-0.5
2,179,665	+		IAI47_10305	0.55	+0.4
2,179,665	+		IAI47_10305	0.55	-0.9
2,179,665	+		IAI47_10305	0.55	+0.9
2,179,665	+		IAI47_10305	0.55	+0.4
2,179,665	+		IAI47_10305	0.55	-0.8
2,179,665	+		IAI47_10305	0.55	-0.1
2,179,665	+		IAI47_10305	0.55	+0.2
2,179,665	+		IAI47_10305	0.55	+1.7
2,179,666	-		IAI47_10305	0.55	-0.9
2,179,666	-		IAI47_10305	0.55	+1.3
2,179,666	-		IAI47_10305	0.55	+0.2
2,179,666	-		IAI47_10305	0.55	+1.4
2,179,666	-		IAI47_10305	0.55	+1.6
2,179,666	-		IAI47_10305	0.55	+0.8
2,179,666	-		IAI47_10305	0.55	+1.4
2,179,666	-		IAI47_10305	0.55	+0.4
2,179,666	-		IAI47_10305	0.55	-2.9
2,179,666	-		IAI47_10305	0.55	-0.1
2,179,666	-		IAI47_10305	0.55	+0.8
2,179,666	-		IAI47_10305	0.55	-0.1
2,179,666	-		IAI47_10305	0.55	+0.1
2,179,666	-		IAI47_10305	0.55	+0.6
2,179,666	-		IAI47_10305	0.55	+0.9
2,179,666	-		IAI47_10305	0.55	+2.2
2,179,666	-		IAI47_10305	0.55	-0.6
2,179,666	-		IAI47_10305	0.55	-0.1
2,179,666	-		IAI47_10305	0.55	+0.4
2,179,666	-		IAI47_10305	0.55	+2.4
2,179,666	-		IAI47_10305	0.55	+0.4
2,179,666	-		IAI47_10305	0.55	-1.1
2,179,672	-		IAI47_10305	0.56	+0.7
2,179,704	+		IAI47_10305	0.59	-1.6
2,179,704	+		IAI47_10305	0.59	+0.3
2,179,704	+		IAI47_10305	0.59	-0.1
2,179,704	+		IAI47_10305	0.59	+1.7
2,179,705	-		IAI47_10305	0.59	-2.4
2,179,705	-		IAI47_10305	0.59	-1.6
2,179,705	-		IAI47_10305	0.59	-3.5