Strain Fitness in Dechlorosoma suillum PS around Dsui_3350

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3348 and Dsui_3349 overlap by 1 nucleotidesDsui_3349 and Dsui_3350 are separated by 232 nucleotidesDsui_3350 and Dsui_3351 are separated by 52 nucleotides Dsui_3348: Dsui_3348 - Zn-finger containing NTP pyrophosphohydrolase, at 3,587,909 to 3,588,412 _3348 Dsui_3349: Dsui_3349 - hypothetical protein, at 3,588,412 to 3,588,723 _3349 Dsui_3350: Dsui_3350 - hypothetical protein, at 3,588,956 to 3,589,264 _3350 Dsui_3351: Dsui_3351 - cytochrome c peroxidase, at 3,589,317 to 3,590,636 _3351 Position (kb) 3588 3589 3590Strain fitness (log2 ratio) -3 -2 -1 0 1at 3588.098 kb on - strand, within Dsui_3348at 3588.195 kb on + strand, within Dsui_3348at 3588.428 kb on - strandat 3588.434 kb on - strandat 3588.434 kb on - strandat 3588.491 kb on - strand, within Dsui_3349at 3588.493 kb on + strand, within Dsui_3349at 3588.591 kb on - strand, within Dsui_3349at 3588.603 kb on + strand, within Dsui_3349at 3588.688 kb on - strand, within Dsui_3349at 3588.699 kb on - strandat 3588.704 kb on - strandat 3588.946 kb on + strandat 3589.026 kb on - strand, within Dsui_3350at 3589.054 kb on + strandat 3589.062 kb on - strandat 3589.110 kb on + strand, within Dsui_3350at 3589.184 kb on + strand, within Dsui_3350at 3589.192 kb on - strand, within Dsui_3350at 3589.258 kb on + strandat 3589.275 kb on + strandat 3589.380 kb on + strandat 3589.425 kb on - strandat 3589.430 kb on - strandat 3589.479 kb on + strand, within Dsui_3351at 3589.626 kb on + strandat 3589.695 kb on + strandat 3589.810 kb on + strandat 3589.816 kb on - strand, within Dsui_3351at 3589.865 kb on + strandat 3589.897 kb on - strandat 3589.940 kb on + strand, within Dsui_3351at 3589.948 kb on - strand, within Dsui_3351at 3589.948 kb on - strandat 3590.053 kb on + strandat 3590.075 kb on - strand, within Dsui_3351at 3590.075 kb on - strand, within Dsui_3351at 3590.103 kb on + strandat 3590.113 kb on + strandat 3590.148 kb on + strandat 3590.151 kb on - strandat 3590.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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3,588,098 - Dsui_3348 0.38 +0.6
3,588,195 + Dsui_3348 0.57 -0.9
3,588,428 - -0.9
3,588,434 - +0.6
3,588,434 - -0.9
3,588,491 - Dsui_3349 0.25 -3.5
3,588,493 + Dsui_3349 0.26 +0.6
3,588,591 - Dsui_3349 0.57 -1.4
3,588,603 + Dsui_3349 0.61 +0.6
3,588,688 - Dsui_3349 0.88 +0.1
3,588,699 - -0.9
3,588,704 - +0.6
3,588,946 + +0.6
3,589,026 - Dsui_3350 0.23 +0.6
3,589,054 + +0.6
3,589,062 - +0.6
3,589,110 + Dsui_3350 0.50 -0.4
3,589,184 + Dsui_3350 0.74 -0.9
3,589,192 - Dsui_3350 0.76 -1.7
3,589,258 + -1.7
3,589,275 + +0.6
3,589,380 + -1.7
3,589,425 - -0.4
3,589,430 - +0.6
3,589,479 + Dsui_3351 0.12 -1.7
3,589,626 + -0.4
3,589,695 + -0.4
3,589,810 + +0.6
3,589,816 - Dsui_3351 0.38 -0.9
3,589,865 + +0.6
3,589,897 - -0.9
3,589,940 + Dsui_3351 0.47 -0.4
3,589,948 - Dsui_3351 0.48 -2.5
3,589,948 - -0.4
3,590,053 + +0.6
3,590,075 - Dsui_3351 0.57 +0.6
3,590,075 - Dsui_3351 0.57 -0.9
3,590,103 + -0.4
3,590,113 + +0.6
3,590,148 + -0.4
3,590,151 - -0.9
3,590,181 - +0.6

Or see this region's nucleotide sequence