Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3223 and Dsui_3224 are separated by 11 nucleotides Dsui_3224 and Dsui_3225 overlap by 4 nucleotides Dsui_3225 and Dsui_3226 are separated by 278 nucleotides
Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717
_3223
Dsui_3224: Dsui_3224 - pterin-4a-carbinolamine dehydratase, at 3,462,729 to 3,463,064
_3224
Dsui_3225: Dsui_3225 - ribosome small subunit-dependent GTPase A, at 3,463,061 to 3,463,948
_3225
Dsui_3226: Dsui_3226 - putative SAM-dependent methyltransferase, at 3,464,227 to 3,465,186
_3226
Position (kb)
3463
3464 Strain fitness (log2 ratio)
-2
-1
0
1 at 3462.152 kb on + strand, within Dsui_3223 at 3462.219 kb on + strand, within Dsui_3223 at 3462.249 kb on + strand, within Dsui_3223 at 3462.280 kb on - strand, within Dsui_3223 at 3462.286 kb on - strand at 3462.287 kb on + strand, within Dsui_3223 at 3462.319 kb on + strand, within Dsui_3223 at 3462.327 kb on - strand, within Dsui_3223 at 3462.332 kb on - strand, within Dsui_3223 at 3462.366 kb on + strand, within Dsui_3223 at 3462.409 kb on + strand, within Dsui_3223 at 3462.427 kb on + strand, within Dsui_3223 at 3462.464 kb on + strand, within Dsui_3223 at 3462.517 kb on + strand, within Dsui_3223 at 3462.535 kb on + strand, within Dsui_3223 at 3462.556 kb on - strand, within Dsui_3223 at 3462.563 kb on - strand, within Dsui_3223 at 3462.570 kb on + strand, within Dsui_3223 at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.687 kb on + strand at 3462.698 kb on + strand at 3462.720 kb on - strand at 3462.740 kb on - strand at 3462.768 kb on - strand, within Dsui_3224 at 3462.962 kb on + strand, within Dsui_3224 at 3462.965 kb on - strand, within Dsui_3224 at 3462.970 kb on - strand, within Dsui_3224 at 3463.072 kb on + strand at 3463.079 kb on + strand at 3463.966 kb on - strand at 3464.058 kb on + strand at 3464.206 kb on + strand at 3464.263 kb on + strand at 3464.324 kb on + strand, within Dsui_3226 at 3464.372 kb on + strand, within Dsui_3226 at 3464.395 kb on - strand, within Dsui_3226 at 3464.486 kb on - strand, within Dsui_3226 at 3464.667 kb on - strand, within Dsui_3226 at 3464.681 kb on - strand at 3464.791 kb on + strand, within Dsui_3226
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 3,462,152 + Dsui_3223 0.56 +1.7 3,462,219 + Dsui_3223 0.61 -0.7 3,462,249 + Dsui_3223 0.63 -0.4 3,462,280 - Dsui_3223 0.66 +0.7 3,462,286 - +0.7 3,462,287 + Dsui_3223 0.66 -1.5 3,462,319 + Dsui_3223 0.69 +0.5 3,462,327 - Dsui_3223 0.69 -1.7 3,462,332 - Dsui_3223 0.70 -0.3 3,462,366 + Dsui_3223 0.72 -0.3 3,462,409 + Dsui_3223 0.76 -0.7 3,462,427 + Dsui_3223 0.77 -0.2 3,462,464 + Dsui_3223 0.80 -1.3 3,462,517 + Dsui_3223 0.84 -0.5 3,462,535 + Dsui_3223 0.86 -0.1 3,462,556 - Dsui_3223 0.87 -0.3 3,462,563 - Dsui_3223 0.88 -1.3 3,462,570 + Dsui_3223 0.88 -0.6 3,462,605 + -0.3 3,462,605 + -0.4 3,462,605 + -0.4 3,462,687 + -0.1 3,462,698 + -0.1 3,462,720 - +0.7 3,462,740 - -0.3 3,462,768 - Dsui_3224 0.12 +0.7 3,462,962 + Dsui_3224 0.69 +0.0 3,462,965 - Dsui_3224 0.70 +0.7 3,462,970 - Dsui_3224 0.72 -0.9 3,463,072 + -0.1 3,463,079 + -2.1 3,463,966 - -0.3 3,464,058 + +0.1 3,464,206 + -0.9 3,464,263 + +0.7 3,464,324 + Dsui_3226 0.10 +0.7 3,464,372 + Dsui_3226 0.15 +0.7 3,464,395 - Dsui_3226 0.17 -0.9 3,464,486 - Dsui_3226 0.27 -1.7 3,464,667 - Dsui_3226 0.46 -2.5 3,464,681 - +0.7 3,464,791 + Dsui_3226 0.59 -1.9
Or see this region's nucleotide sequence