Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3178 and Dsui_3179 are separated by 16 nucleotides Dsui_3179 and Dsui_3180 overlap by 1 nucleotides Dsui_3180 and Dsui_3181 are separated by 182 nucleotides
Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111
_3178
Dsui_3179: Dsui_3179 - signal transduction histidine kinase, at 3,410,128 to 3,411,192
_3179
Dsui_3180: Dsui_3180 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,411,192 to 3,411,902
_3180
Dsui_3181: Dsui_3181 - RND family efflux transporter, MFP subunit, at 3,412,085 to 3,413,245
_3181
Position (kb)
3410
3411
3412 Strain fitness (log2 ratio)
-2
-1
0
1 at 3409.189 kb on - strand, within Dsui_3178 at 3409.208 kb on - strand, within Dsui_3178 at 3409.220 kb on - strand at 3409.274 kb on - strand at 3409.291 kb on + strand at 3409.299 kb on - strand, within Dsui_3178 at 3409.397 kb on + strand, within Dsui_3178 at 3409.400 kb on - strand at 3409.401 kb on + strand at 3409.462 kb on + strand at 3409.491 kb on - strand at 3409.532 kb on - strand at 3409.548 kb on + strand, within Dsui_3178 at 3409.577 kb on + strand at 3409.679 kb on + strand, within Dsui_3178 at 3409.756 kb on + strand, within Dsui_3178 at 3409.908 kb on + strand, within Dsui_3178 at 3410.219 kb on - strand at 3410.232 kb on + strand at 3410.425 kb on - strand at 3410.485 kb on - strand, within Dsui_3179 at 3410.504 kb on - strand, within Dsui_3179 at 3410.590 kb on - strand, within Dsui_3179 at 3410.703 kb on + strand at 3410.751 kb on + strand at 3410.759 kb on - strand, within Dsui_3179 at 3410.999 kb on - strand, within Dsui_3179 at 3411.132 kb on + strand at 3411.211 kb on - strand at 3411.268 kb on - strand, within Dsui_3180 at 3411.419 kb on - strand, within Dsui_3180 at 3411.490 kb on + strand at 3411.553 kb on - strand, within Dsui_3180 at 3411.610 kb on + strand, within Dsui_3180 at 3411.633 kb on + strand, within Dsui_3180 at 3411.749 kb on + strand at 3411.773 kb on + strand, within Dsui_3180 at 3411.781 kb on - strand, within Dsui_3180 at 3412.035 kb on - strand at 3412.038 kb on + strand at 3412.045 kb on - strand at 3412.050 kb on - strand at 3412.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 3,409,189 - Dsui_3178 0.24 -0.9 3,409,208 - Dsui_3178 0.25 -1.3 3,409,220 - +0.7 3,409,274 - +0.7 3,409,291 + -0.3 3,409,299 - Dsui_3178 0.33 +0.7 3,409,397 + Dsui_3178 0.41 -0.3 3,409,400 - -0.3 3,409,401 + +0.7 3,409,462 + -0.9 3,409,491 - +0.7 3,409,532 - -0.9 3,409,548 + Dsui_3178 0.53 -0.9 3,409,577 + +0.7 3,409,679 + Dsui_3178 0.64 -1.3 3,409,756 + Dsui_3178 0.71 -0.3 3,409,908 + Dsui_3178 0.83 -2.3 3,410,219 - -1.3 3,410,232 + +0.7 3,410,425 - +0.7 3,410,485 - Dsui_3179 0.34 -0.6 3,410,504 - Dsui_3179 0.35 -0.3 3,410,590 - Dsui_3179 0.43 -1.3 3,410,703 + +0.7 3,410,751 + +0.7 3,410,759 - Dsui_3179 0.59 -0.9 3,410,999 - Dsui_3179 0.82 -2.3 3,411,132 + +0.7 3,411,211 - +0.7 3,411,268 - Dsui_3180 0.11 -0.3 3,411,419 - Dsui_3180 0.32 +0.7 3,411,490 + +0.7 3,411,553 - Dsui_3180 0.51 -1.3 3,411,610 + Dsui_3180 0.59 +0.7 3,411,633 + Dsui_3180 0.62 -0.9 3,411,749 + +0.7 3,411,773 + Dsui_3180 0.82 -0.3 3,411,781 - Dsui_3180 0.83 -0.9 3,412,035 - +0.7 3,412,038 + -0.3 3,412,045 - +0.7 3,412,050 - -0.9 3,412,163 + -0.9
Or see this region's nucleotide sequence