Strain Fitness in Dechlorosoma suillum PS around Dsui_2926

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2925 and Dsui_2926 are separated by 98 nucleotidesDsui_2926 and Dsui_2927 are separated by 243 nucleotidesDsui_2927 and Dsui_2928 are separated by 175 nucleotides Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424 _2925 Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689 _2926 Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454 _2927 Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652 _2928 Position (kb) 3129 3130 3131Strain fitness (log2 ratio) -2 -1 0 1at 3128.544 kb on + strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.580 kb on - strand, within Dsui_2925at 3128.588 kb on - strand, within Dsui_2925at 3128.610 kb on + strandat 3128.658 kb on + strand, within Dsui_2925at 3128.666 kb on - strand, within Dsui_2925at 3128.673 kb on + strand, within Dsui_2925at 3128.681 kb on - strand, within Dsui_2925at 3128.700 kb on + strand, within Dsui_2925at 3128.825 kb on - strand, within Dsui_2925at 3128.956 kb on + strandat 3129.049 kb on - strand, within Dsui_2925at 3129.167 kb on + strandat 3129.176 kb on - strand, within Dsui_2925at 3129.221 kb on - strand, within Dsui_2925at 3129.269 kb on + strandat 3129.309 kb on - strandat 3129.309 kb on - strandat 3129.323 kb on - strandat 3129.359 kb on - strandat 3129.409 kb on + strandat 3129.409 kb on - strandat 3129.417 kb on - strandat 3129.439 kb on - strandat 3129.454 kb on + strandat 3129.454 kb on + strandat 3129.456 kb on + strandat 3129.464 kb on - strandat 3129.489 kb on + strandat 3129.508 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.562 kb on - strandat 3129.607 kb on - strandat 3129.646 kb on + strand, within Dsui_2926at 3129.658 kb on + strandat 3129.661 kb on - strand, within Dsui_2926at 3129.721 kb on - strand, within Dsui_2926at 3129.721 kb on - strand, within Dsui_2926at 3129.721 kb on - strandat 3129.833 kb on + strand, within Dsui_2926at 3129.863 kb on + strandat 3129.976 kb on - strand, within Dsui_2926at 3129.995 kb on - strand, within Dsui_2926at 3130.019 kb on - strand, within Dsui_2926at 3130.023 kb on + strandat 3130.125 kb on - strand, within Dsui_2926at 3130.223 kb on + strandat 3130.242 kb on - strand, within Dsui_2926at 3130.488 kb on + strandat 3130.496 kb on - strand, within Dsui_2926at 3130.496 kb on - strand, within Dsui_2926at 3130.516 kb on - strand, within Dsui_2926at 3130.685 kb on + strandat 3130.693 kb on - strandat 3130.706 kb on - strandat 3130.760 kb on + strandat 3130.775 kb on + strandat 3130.903 kb on - strandat 3130.963 kb on + strandat 3130.974 kb on + strandat 3130.974 kb on + strandat 3130.983 kb on - strandat 3131.200 kb on + strand, within Dsui_2927at 3131.574 kb on + strandat 3131.582 kb on - strandat 3131.609 kb on - strandat 3131.615 kb on + strandat 3131.628 kb on + strandat 3131.679 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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3,128,544 + Dsui_2925 0.53 -0.9
3,128,552 - Dsui_2925 0.54 -0.5
3,128,552 - Dsui_2925 0.54 -0.7
3,128,552 - Dsui_2925 0.54 -1.4
3,128,552 - Dsui_2925 0.54 -0.6
3,128,580 - Dsui_2925 0.55 +0.0
3,128,588 - Dsui_2925 0.56 -1.1
3,128,610 + +0.7
3,128,658 + Dsui_2925 0.59 -0.3
3,128,666 - Dsui_2925 0.60 -0.9
3,128,673 + Dsui_2925 0.60 -1.9
3,128,681 - Dsui_2925 0.61 -0.8
3,128,700 + Dsui_2925 0.62 -1.3
3,128,825 - Dsui_2925 0.68 -0.7
3,128,956 + +0.7
3,129,049 - Dsui_2925 0.80 -0.9
3,129,167 + +0.7
3,129,176 - Dsui_2925 0.87 -1.0
3,129,221 - Dsui_2925 0.89 -0.5
3,129,269 + +0.7
3,129,309 - -1.4
3,129,309 - -1.0
3,129,323 - -0.8
3,129,359 - -1.0
3,129,409 + -0.3
3,129,409 - -0.8
3,129,417 - -0.8
3,129,439 - -0.1
3,129,454 + -0.3
3,129,454 + +0.7
3,129,456 + +0.7
3,129,464 - -0.6
3,129,489 + +0.7
3,129,508 - -0.5
3,129,561 - -1.1
3,129,561 - -0.4
3,129,561 - -0.3
3,129,561 - -0.2
3,129,562 - -0.3
3,129,607 - -0.2
3,129,646 + Dsui_2926 0.11 +0.7
3,129,658 + -0.3
3,129,661 - Dsui_2926 0.12 -0.5
3,129,721 - Dsui_2926 0.17 -0.8
3,129,721 - Dsui_2926 0.17 +0.1
3,129,721 - -0.6
3,129,833 + Dsui_2926 0.27 +0.7
3,129,863 + -0.3
3,129,976 - Dsui_2926 0.39 -0.3
3,129,995 - Dsui_2926 0.40 -1.5
3,130,019 - Dsui_2926 0.43 -1.3
3,130,023 + +0.7
3,130,125 - Dsui_2926 0.52 -1.5
3,130,223 + +0.7
3,130,242 - Dsui_2926 0.62 -1.5
3,130,488 + +0.7
3,130,496 - Dsui_2926 0.83 -0.4
3,130,496 - Dsui_2926 0.83 -0.6
3,130,516 - Dsui_2926 0.85 -0.3
3,130,685 + +0.7
3,130,693 - -1.0
3,130,706 - -0.5
3,130,760 + -0.3
3,130,775 + +0.7
3,130,903 - -0.9
3,130,963 + -0.6
3,130,974 + -0.8
3,130,974 + -0.9
3,130,983 - +0.7
3,131,200 + Dsui_2927 0.51 -1.1
3,131,574 + -0.3
3,131,582 - -1.3
3,131,609 - -0.3
3,131,615 + -0.9
3,131,628 + -0.6
3,131,679 + -1.9

Or see this region's nucleotide sequence