Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2925 and Dsui_2926 are separated by 98 nucleotides Dsui_2926 and Dsui_2927 are separated by 243 nucleotides Dsui_2927 and Dsui_2928 are separated by 175 nucleotides
Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424
_2925
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454
_2927
Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652
_2928
Position (kb)
3129
3130
3131 Strain fitness (log2 ratio)
-2
-1
0
1 at 3128.544 kb on + strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.580 kb on - strand, within Dsui_2925 at 3128.588 kb on - strand, within Dsui_2925 at 3128.610 kb on + strand at 3128.658 kb on + strand, within Dsui_2925 at 3128.666 kb on - strand, within Dsui_2925 at 3128.673 kb on + strand, within Dsui_2925 at 3128.681 kb on - strand, within Dsui_2925 at 3128.700 kb on + strand, within Dsui_2925 at 3128.825 kb on - strand, within Dsui_2925 at 3128.956 kb on + strand at 3129.049 kb on - strand, within Dsui_2925 at 3129.167 kb on + strand at 3129.176 kb on - strand, within Dsui_2925 at 3129.221 kb on - strand, within Dsui_2925 at 3129.269 kb on + strand at 3129.309 kb on - strand at 3129.309 kb on - strand at 3129.323 kb on - strand at 3129.359 kb on - strand at 3129.409 kb on + strand at 3129.409 kb on - strand at 3129.417 kb on - strand at 3129.439 kb on - strand at 3129.454 kb on + strand at 3129.454 kb on + strand at 3129.456 kb on + strand at 3129.464 kb on - strand at 3129.489 kb on + strand at 3129.508 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.562 kb on - strand at 3129.607 kb on - strand at 3129.646 kb on + strand, within Dsui_2926 at 3129.658 kb on + strand at 3129.661 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand at 3129.833 kb on + strand, within Dsui_2926 at 3129.863 kb on + strand at 3129.976 kb on - strand, within Dsui_2926 at 3129.995 kb on - strand, within Dsui_2926 at 3130.019 kb on - strand, within Dsui_2926 at 3130.023 kb on + strand at 3130.125 kb on - strand, within Dsui_2926 at 3130.223 kb on + strand at 3130.242 kb on - strand, within Dsui_2926 at 3130.488 kb on + strand at 3130.496 kb on - strand, within Dsui_2926 at 3130.496 kb on - strand, within Dsui_2926 at 3130.516 kb on - strand, within Dsui_2926 at 3130.685 kb on + strand at 3130.693 kb on - strand at 3130.706 kb on - strand at 3130.760 kb on + strand at 3130.775 kb on + strand at 3130.903 kb on - strand at 3130.963 kb on + strand at 3130.974 kb on + strand at 3130.974 kb on + strand at 3130.983 kb on - strand at 3131.200 kb on + strand, within Dsui_2927 at 3131.574 kb on + strand at 3131.582 kb on - strand at 3131.609 kb on - strand at 3131.615 kb on + strand at 3131.628 kb on + strand at 3131.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 3,128,544 + Dsui_2925 0.53 -0.9 3,128,552 - Dsui_2925 0.54 -0.5 3,128,552 - Dsui_2925 0.54 -0.7 3,128,552 - Dsui_2925 0.54 -1.4 3,128,552 - Dsui_2925 0.54 -0.6 3,128,580 - Dsui_2925 0.55 +0.0 3,128,588 - Dsui_2925 0.56 -1.1 3,128,610 + +0.7 3,128,658 + Dsui_2925 0.59 -0.3 3,128,666 - Dsui_2925 0.60 -0.9 3,128,673 + Dsui_2925 0.60 -1.9 3,128,681 - Dsui_2925 0.61 -0.8 3,128,700 + Dsui_2925 0.62 -1.3 3,128,825 - Dsui_2925 0.68 -0.7 3,128,956 + +0.7 3,129,049 - Dsui_2925 0.80 -0.9 3,129,167 + +0.7 3,129,176 - Dsui_2925 0.87 -1.0 3,129,221 - Dsui_2925 0.89 -0.5 3,129,269 + +0.7 3,129,309 - -1.4 3,129,309 - -1.0 3,129,323 - -0.8 3,129,359 - -1.0 3,129,409 + -0.3 3,129,409 - -0.8 3,129,417 - -0.8 3,129,439 - -0.1 3,129,454 + -0.3 3,129,454 + +0.7 3,129,456 + +0.7 3,129,464 - -0.6 3,129,489 + +0.7 3,129,508 - -0.5 3,129,561 - -1.1 3,129,561 - -0.4 3,129,561 - -0.3 3,129,561 - -0.2 3,129,562 - -0.3 3,129,607 - -0.2 3,129,646 + Dsui_2926 0.11 +0.7 3,129,658 + -0.3 3,129,661 - Dsui_2926 0.12 -0.5 3,129,721 - Dsui_2926 0.17 -0.8 3,129,721 - Dsui_2926 0.17 +0.1 3,129,721 - -0.6 3,129,833 + Dsui_2926 0.27 +0.7 3,129,863 + -0.3 3,129,976 - Dsui_2926 0.39 -0.3 3,129,995 - Dsui_2926 0.40 -1.5 3,130,019 - Dsui_2926 0.43 -1.3 3,130,023 + +0.7 3,130,125 - Dsui_2926 0.52 -1.5 3,130,223 + +0.7 3,130,242 - Dsui_2926 0.62 -1.5 3,130,488 + +0.7 3,130,496 - Dsui_2926 0.83 -0.4 3,130,496 - Dsui_2926 0.83 -0.6 3,130,516 - Dsui_2926 0.85 -0.3 3,130,685 + +0.7 3,130,693 - -1.0 3,130,706 - -0.5 3,130,760 + -0.3 3,130,775 + +0.7 3,130,903 - -0.9 3,130,963 + -0.6 3,130,974 + -0.8 3,130,974 + -0.9 3,130,983 - +0.7 3,131,200 + Dsui_2927 0.51 -1.1 3,131,574 + -0.3 3,131,582 - -1.3 3,131,609 - -0.3 3,131,615 + -0.9 3,131,628 + -0.6 3,131,679 + -1.9
Or see this region's nucleotide sequence