Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2708 and Dsui_2709 are separated by 22 nucleotides Dsui_2709 and Dsui_2710 are separated by 59 nucleotides Dsui_2710 and Dsui_2711 are separated by 22 nucleotides
Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732
_2708
Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573
_2709
Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814
_2710
Dsui_2711: Dsui_2711 - succinyl-diaminopimelate desuccinylase, at 2,867,837 to 2,868,988
_2711
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-2
-1
0
1 at 2865.709 kb on - strand at 2865.726 kb on + strand at 2865.727 kb on + strand at 2866.577 kb on + strand at 2866.582 kb on + strand at 2866.650 kb on + strand at 2866.794 kb on + strand, within Dsui_2710 at 2866.802 kb on - strand, within Dsui_2710 at 2866.817 kb on + strand, within Dsui_2710 at 2866.834 kb on + strand, within Dsui_2710 at 2866.920 kb on - strand, within Dsui_2710 at 2866.953 kb on - strand at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2867.094 kb on + strand, within Dsui_2710 at 2867.202 kb on - strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.285 kb on - strand, within Dsui_2710 at 2867.417 kb on - strand, within Dsui_2710 at 2867.498 kb on + strand, within Dsui_2710 at 2867.508 kb on + strand, within Dsui_2710 at 2867.539 kb on - strand at 2867.541 kb on + strand, within Dsui_2710 at 2867.584 kb on - strand, within Dsui_2710 at 2867.642 kb on + strand, within Dsui_2710 at 2867.659 kb on + strand, within Dsui_2710 at 2867.823 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 2,865,709 - +0.7 2,865,726 + +0.2 2,865,727 + +0.0 2,866,577 + -0.1 2,866,582 + +0.1 2,866,650 + +0.0 2,866,794 + Dsui_2710 0.14 -0.0 2,866,802 - Dsui_2710 0.14 +0.7 2,866,817 + Dsui_2710 0.16 -0.9 2,866,834 + Dsui_2710 0.17 +0.0 2,866,920 - Dsui_2710 0.24 +0.7 2,866,953 - +0.7 2,866,955 + Dsui_2710 0.27 -0.1 2,866,955 + Dsui_2710 0.27 +0.1 2,866,955 + Dsui_2710 0.27 -0.8 2,866,955 + Dsui_2710 0.27 -0.7 2,867,094 + Dsui_2710 0.39 -0.1 2,867,202 - Dsui_2710 0.48 -0.9 2,867,272 + Dsui_2710 0.54 -0.2 2,867,272 + Dsui_2710 0.54 -0.3 2,867,272 + Dsui_2710 0.54 -1.4 2,867,285 - Dsui_2710 0.55 -1.3 2,867,417 - Dsui_2710 0.66 -0.3 2,867,498 + Dsui_2710 0.73 -0.5 2,867,508 + Dsui_2710 0.74 -0.1 2,867,539 - +0.7 2,867,541 + Dsui_2710 0.77 +0.4 2,867,584 - Dsui_2710 0.80 +0.7 2,867,642 + Dsui_2710 0.85 -0.1 2,867,659 + Dsui_2710 0.87 -0.2 2,867,823 + -2.0
Or see this region's nucleotide sequence