Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2421 and Dsui_2422 are separated by 47 nucleotides Dsui_2422 and Dsui_2423 are separated by 270 nucleotides Dsui_2423 and Dsui_2424 are separated by 5 nucleotides Dsui_2424 and Dsui_2425 are separated by 39 nucleotides
Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223
_2421
Dsui_2422: Dsui_2422 - truncated hemoglobin, at 2,581,271 to 2,581,657
_2422
Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742
_2423
Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906
_2424
Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865
_2425
Position (kb)
2581
2582
2583
2584 Strain fitness (log2 ratio)
-1
0
1 at 2580.937 kb on - strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.958 kb on + strand, within Dsui_2421 at 2580.976 kb on + strand, within Dsui_2421 at 2580.989 kb on + strand, within Dsui_2421 at 2581.029 kb on + strand, within Dsui_2421 at 2581.153 kb on + strand at 2581.181 kb on + strand at 2581.198 kb on - strand at 2581.198 kb on - strand at 2581.307 kb on + strand at 2581.398 kb on + strand, within Dsui_2422 at 2581.406 kb on - strand at 2581.407 kb on + strand, within Dsui_2422 at 2581.413 kb on + strand at 2581.451 kb on - strand, within Dsui_2422 at 2581.530 kb on + strand, within Dsui_2422 at 2581.556 kb on + strand, within Dsui_2422 at 2581.563 kb on + strand, within Dsui_2422 at 2581.749 kb on + strand at 2581.842 kb on + strand at 2581.886 kb on + strand at 2581.886 kb on + strand at 2583.857 kb on - strand, within Dsui_2424 at 2583.984 kb on + strand at 2584.070 kb on + strand at 2584.091 kb on - strand at 2584.170 kb on - strand, within Dsui_2425 at 2584.230 kb on - strand, within Dsui_2425 at 2584.332 kb on + strand, within Dsui_2425 at 2584.353 kb on - strand, within Dsui_2425 at 2584.516 kb on + strand, within Dsui_2425 at 2584.532 kb on - strand, within Dsui_2425 at 2584.661 kb on - strand, within Dsui_2425
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 2,580,937 - Dsui_2421 0.78 +0.1 2,580,958 + Dsui_2421 0.80 +0.5 2,580,958 + Dsui_2421 0.80 -0.1 2,580,976 + Dsui_2421 0.81 -1.6 2,580,989 + Dsui_2421 0.82 -0.3 2,581,029 + Dsui_2421 0.85 -1.1 2,581,153 + -0.7 2,581,181 + +0.2 2,581,198 - -0.4 2,581,198 - -0.4 2,581,307 + +0.7 2,581,398 + Dsui_2422 0.33 -0.1 2,581,406 - -1.6 2,581,407 + Dsui_2422 0.35 -0.5 2,581,413 + -1.3 2,581,451 - Dsui_2422 0.47 -0.9 2,581,530 + Dsui_2422 0.67 -0.0 2,581,556 + Dsui_2422 0.74 -0.1 2,581,563 + Dsui_2422 0.75 -1.7 2,581,749 + -1.1 2,581,842 + -0.2 2,581,886 + -0.4 2,581,886 + -0.1 2,583,857 - Dsui_2424 0.69 -1.3 2,583,984 + -0.3 2,584,070 + -0.3 2,584,091 - +0.2 2,584,170 - Dsui_2425 0.12 -0.7 2,584,230 - Dsui_2425 0.15 -0.4 2,584,332 + Dsui_2425 0.20 +0.7 2,584,353 - Dsui_2425 0.21 -0.9 2,584,516 + Dsui_2425 0.30 +0.7 2,584,532 - Dsui_2425 0.31 -0.1 2,584,661 - Dsui_2425 0.37 -0.3
Or see this region's nucleotide sequence