Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2293 and Dsui_2294 are separated by 51 nucleotides Dsui_2294 and Dsui_2295 are separated by 169 nucleotides Dsui_2295 and Dsui_2296 are separated by 304 nucleotides
Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483
_2293
Dsui_2294: Dsui_2294 - phasin family protein, at 2,448,535 to 2,449,032
_2294
Dsui_2295: Dsui_2295 - transcriptional regulator, at 2,449,202 to 2,449,843
_2295
Dsui_2296: Dsui_2296 - chemotaxis protein, at 2,450,148 to 2,450,747
_2296
Position (kb)
2449
2450 Strain fitness (log2 ratio)
-2
-1
0
1 at 2448.331 kb on - strand at 2448.367 kb on + strand at 2448.384 kb on - strand at 2448.478 kb on + strand at 2448.487 kb on - strand at 2448.603 kb on - strand, within Dsui_2294 at 2448.797 kb on + strand, within Dsui_2294 at 2448.803 kb on - strand, within Dsui_2294 at 2448.804 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.805 kb on - strand, within Dsui_2294 at 2448.968 kb on - strand, within Dsui_2294 at 2449.042 kb on - strand at 2449.162 kb on + strand at 2449.263 kb on + strand at 2449.506 kb on + strand, within Dsui_2295 at 2449.890 kb on - strand at 2449.898 kb on + strand at 2450.150 kb on - strand at 2450.187 kb on + strand at 2450.214 kb on + strand, within Dsui_2296 at 2450.420 kb on + strand, within Dsui_2296 at 2450.487 kb on + strand, within Dsui_2296 at 2450.563 kb on + strand, within Dsui_2296 at 2450.674 kb on - strand at 2450.741 kb on + strand at 2450.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 2,448,331 - -1.3 2,448,367 + +0.7 2,448,384 - +0.7 2,448,478 + +0.7 2,448,487 - -0.8 2,448,603 - Dsui_2294 0.14 +1.5 2,448,797 + Dsui_2294 0.53 -0.3 2,448,803 - Dsui_2294 0.54 -0.3 2,448,804 - Dsui_2294 0.54 -0.3 2,448,805 - Dsui_2294 0.54 -0.3 2,448,805 - Dsui_2294 0.54 +0.7 2,448,968 - Dsui_2294 0.87 +0.7 2,449,042 - +0.7 2,449,162 + +0.7 2,449,263 + -0.3 2,449,506 + Dsui_2295 0.47 -2.4 2,449,890 - +0.7 2,449,898 + +0.7 2,450,150 - -0.3 2,450,187 + -0.5 2,450,214 + Dsui_2296 0.11 -2.3 2,450,420 + Dsui_2296 0.45 -0.5 2,450,487 + Dsui_2296 0.56 -0.4 2,450,563 + Dsui_2296 0.69 -0.2 2,450,674 - +0.7 2,450,741 + -0.2 2,450,839 - +0.7
Or see this region's nucleotide sequence