Strain Fitness in Dechlorosoma suillum PS around Dsui_2179

Experiment: ALP with sodium fluoride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2177 and Dsui_2178 are separated by 67 nucleotidesDsui_2178 and Dsui_2179 are separated by 34 nucleotidesDsui_2179 and Dsui_2180 are separated by 78 nucleotidesDsui_2180 and Dsui_2181 are separated by 125 nucleotides Dsui_2177: Dsui_2177 - methyltransferase family protein, at 2,313,632 to 2,314,270 _2177 Dsui_2178: Dsui_2178 - hypothetical protein, at 2,314,338 to 2,315,144 _2178 Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745 _2179 Dsui_2180: Dsui_2180 - hypothetical protein, at 2,315,824 to 2,316,072 _2180 Dsui_2181: Dsui_2181 - DNA-binding domain-containing protein, AraC-type, at 2,316,198 to 2,316,983 _2181 Position (kb) 2315 2316Strain fitness (log2 ratio) -1 0 1at 2314.243 kb on - strandat 2314.371 kb on + strandat 2314.429 kb on + strand, within Dsui_2178at 2314.523 kb on - strand, within Dsui_2178at 2314.561 kb on + strand, within Dsui_2178at 2314.583 kb on + strand, within Dsui_2178at 2314.826 kb on + strand, within Dsui_2178at 2314.852 kb on + strandat 2314.857 kb on - strandat 2315.096 kb on + strandat 2315.214 kb on - strandat 2315.254 kb on + strand, within Dsui_2179at 2315.313 kb on + strand, within Dsui_2179at 2315.377 kb on - strandat 2315.404 kb on + strand, within Dsui_2179at 2315.411 kb on - strandat 2315.412 kb on - strand, within Dsui_2179at 2315.498 kb on + strand, within Dsui_2179at 2315.570 kb on + strandat 2315.706 kb on + strandat 2315.734 kb on - strandat 2315.931 kb on + strandat 2316.023 kb on - strand, within Dsui_2180at 2316.036 kb on + strandat 2316.043 kb on + strand, within Dsui_2180at 2316.075 kb on - strandat 2316.168 kb on + strandat 2316.278 kb on - strand, within Dsui_2181at 2316.475 kb on - strand, within Dsui_2181at 2316.486 kb on - strand, within Dsui_2181at 2316.535 kb on + strandat 2316.580 kb on - strand, within Dsui_2181at 2316.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM
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2,314,243 - -0.6
2,314,371 + -1.6
2,314,429 + Dsui_2178 0.11 -1.6
2,314,523 - Dsui_2178 0.23 -0.6
2,314,561 + Dsui_2178 0.28 -0.6
2,314,583 + Dsui_2178 0.30 -0.6
2,314,826 + Dsui_2178 0.60 -0.8
2,314,852 + +1.0
2,314,857 - -0.6
2,315,096 + -0.0
2,315,214 - -1.4
2,315,254 + Dsui_2179 0.13 +1.0
2,315,313 + Dsui_2179 0.24 +0.2
2,315,377 - +1.0
2,315,404 + Dsui_2179 0.40 -0.9
2,315,411 - +1.0
2,315,412 - Dsui_2179 0.41 -1.4
2,315,498 + Dsui_2179 0.56 -0.3
2,315,570 + -0.0
2,315,706 + -1.4
2,315,734 - -0.6
2,315,931 + +1.0
2,316,023 - Dsui_2180 0.80 +0.2
2,316,036 + +1.0
2,316,043 + Dsui_2180 0.88 +1.0
2,316,075 - -0.0
2,316,168 + +1.0
2,316,278 - Dsui_2181 0.10 -0.0
2,316,475 - Dsui_2181 0.35 -1.2
2,316,486 - Dsui_2181 0.37 +0.6
2,316,535 + +1.0
2,316,580 - Dsui_2181 0.49 -1.7
2,316,742 + -0.0

Or see this region's nucleotide sequence