Experiment: ALP with sodium fluoride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2042 and Dsui_2043 are separated by 173 nucleotides Dsui_2043 and Dsui_2044 are separated by 262 nucleotides
Dsui_2042: Dsui_2042 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,160,767 to 2,161,945
_2042
Dsui_2043: Dsui_2043 - cysteine synthase, at 2,162,119 to 2,163,624
_2043
Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660
_2044
Position (kb)
2162
2163
2164 Strain fitness (log2 ratio)
-2
-1
0
1 at 2161.173 kb on - strand, within Dsui_2042 at 2161.211 kb on + strand, within Dsui_2042 at 2161.305 kb on - strand, within Dsui_2042 at 2161.401 kb on + strand at 2161.565 kb on - strand, within Dsui_2042 at 2161.610 kb on + strand, within Dsui_2042 at 2161.610 kb on + strand at 2161.636 kb on - strand, within Dsui_2042 at 2161.674 kb on - strand at 2161.705 kb on - strand, within Dsui_2042 at 2161.771 kb on + strand, within Dsui_2042 at 2161.798 kb on - strand, within Dsui_2042 at 2161.881 kb on + strand at 2161.941 kb on + strand at 2161.941 kb on + strand at 2161.976 kb on + strand at 2161.994 kb on + strand at 2162.250 kb on - strand at 2162.782 kb on - strand, within Dsui_2043 at 2162.862 kb on + strand, within Dsui_2043 at 2163.094 kb on + strand at 2163.146 kb on - strand, within Dsui_2043 at 2163.206 kb on - strand at 2163.228 kb on + strand at 2163.249 kb on + strand at 2163.253 kb on - strand, within Dsui_2043 at 2163.305 kb on - strand at 2163.430 kb on - strand, within Dsui_2043 at 2163.463 kb on - strand, within Dsui_2043 at 2163.473 kb on - strand, within Dsui_2043 at 2163.628 kb on + strand at 2163.628 kb on + strand at 2163.646 kb on + strand at 2163.647 kb on + strand at 2163.647 kb on + strand at 2163.647 kb on + strand at 2163.655 kb on - strand at 2163.845 kb on + strand at 2163.845 kb on + strand at 2163.853 kb on - strand at 2163.973 kb on + strand, within Dsui_2044 at 2164.025 kb on - strand, within Dsui_2044 at 2164.072 kb on - strand at 2164.075 kb on + strand, within Dsui_2044 at 2164.089 kb on + strand at 2164.114 kb on - strand at 2164.174 kb on + strand, within Dsui_2044 at 2164.259 kb on - strand at 2164.409 kb on + strand, within Dsui_2044
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 40 mM remove 2,161,173 - Dsui_2042 0.34 -1.3 2,161,211 + Dsui_2042 0.38 +0.4 2,161,305 - Dsui_2042 0.46 -1.0 2,161,401 + +1.0 2,161,565 - Dsui_2042 0.68 -0.6 2,161,610 + Dsui_2042 0.72 +0.0 2,161,610 + -0.6 2,161,636 - Dsui_2042 0.74 +0.0 2,161,674 - +1.0 2,161,705 - Dsui_2042 0.80 +1.0 2,161,771 + Dsui_2042 0.85 +1.0 2,161,798 - Dsui_2042 0.87 +1.0 2,161,881 + +1.0 2,161,941 + +1.0 2,161,941 + +1.0 2,161,976 + -1.0 2,161,994 + +1.0 2,162,250 - +1.0 2,162,782 - Dsui_2043 0.44 +1.0 2,162,862 + Dsui_2043 0.49 +1.0 2,163,094 + +1.0 2,163,146 - Dsui_2043 0.68 -1.8 2,163,206 - +1.0 2,163,228 + +1.0 2,163,249 + +1.0 2,163,253 - Dsui_2043 0.75 +0.0 2,163,305 - +1.0 2,163,430 - Dsui_2043 0.87 +0.0 2,163,463 - Dsui_2043 0.89 -1.0 2,163,473 - Dsui_2043 0.90 -0.6 2,163,628 + +1.0 2,163,628 + +1.0 2,163,646 + +1.0 2,163,647 + -0.6 2,163,647 + +1.0 2,163,647 + -1.3 2,163,655 - +1.0 2,163,845 + +1.0 2,163,845 + +1.0 2,163,853 - +0.0 2,163,973 + Dsui_2044 0.11 +1.0 2,164,025 - Dsui_2044 0.18 +0.0 2,164,072 - +0.0 2,164,075 + Dsui_2044 0.24 +0.0 2,164,089 + +1.0 2,164,114 - +0.0 2,164,174 + Dsui_2044 0.37 +1.6 2,164,259 - +1.0 2,164,409 + Dsui_2044 0.67 +0.0
Or see this region's nucleotide sequence